AgBioData
@AgBioData
We work together to solve common database issues to utilize #agricultural #biological #data & to create best practices with more interoperability.
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Plant genomes are complex, but naming them doesn’t have to be! 👉 Check out @AgBioData Genome Nomenclature Group's 'Guidelines on Genome & Gene Assembly Nomenclature' @GeneticsGSA doi.org/10.1093/geneti… As past chair of the group, I'm excited to see this work published 🧬
academic.oup.com
Guidelines for gene and genome assembly nomenclature
Abstract. The rapid increase in the number of reference-quality genome assemblies presents significant new opportunities for genomic research. However, the
How to make agricultural data FAIR. Outputs of the @AgBioData data reuse WG published by @alenka_hafner et al. Data reuse in agricultural genomics research: challenges and recommendations doi.org/10.1093/gigasc…
Do you know where to submit your genetic or genomic data from your project? Come to Booth #207 to talk to data scientists from multiple agricultural biological databases about where to submit your data for all the research community. #PAG2025 #PAG32
Register for our upcoming webinar with Dr. Jacqueline D. Campbell Registration link: shorturl.at/oSVp1 Mark your calendar for an amazing learning experience! #napb #plantbreeding
Today @cktuggle @colepbio and Muskan Kapoor gave wonderful presentation about single-cell RNA data biocuration in plants and livestock. You can rewatch the webinar on our YouTube channel youtu.be/PkZbUDNzX6Y
Today, we had a great webinar with Ben Rosen about the ruminant pan-genome! In case you missed it, you can watch it again on our YouTube channel youtu.be/8hpZwXGDR5E
How to share data — not just equally, but equitably nature.com/articles/d4158…
Great webinar today about PHIS, an ontology-based information system for plant phenotyping. In case you missed it, the recording are on our YouTube channel youtu.be/iJKjYbKHQcg
youtube.com
YouTube
PHIS, an ontology-based Information System for Plant Phenotyping
Join us tomorrow at 12 PM CET 🗓️ for our monthly webinar! Pascal Neveu will talk about #phenotypic #datamanagement and #standardization and the EMPHASIS project @EMPHASIS_Be Zoom link available on Slack agbiodata.org/join-slack or through our mailing list agbiodata.org/user/register
Join us tomorrow at 12 PM CET 🗓️ for our monthly webinar! Pascal Neveu will talk about #phenotypic #datamanagement and #standardization and the EMPHASIS project @EMPHASIS_Be Zoom link available on Slack agbiodata.org/join-slack or through our mailing list agbiodata.org/user/register
The recording of our last webinar with @harry_caufield is on YouTube youtu.be/z38lI6WyBsY. Thanks, Harry, for the great presentation!
youtube.com
YouTube
Staying grounded: assembling structured biological knowledge with...
Join us on Sept 6 at 12 PM for our monthly webinar! Harry Caufield will explain how to assemble structured biological knowledge with help from large language models @chrismungall
Join us on Sept 6 at 12 PM for our monthly webinar! Harry Caufield will explain how to assemble structured biological knowledge with help from large language models @chrismungall
We opened #PlantBio2023 this morning with a great workshop on education on #FAIR data in plant science. Thanks to the speakers @JasonWilliamsNY @yalahowy and Meg Staton for the presentations! You can find the slides on our website agbiodata.org/bfair-wks
The #Ontologies and #Data Federation WGs conducted a survey to assess the status and future needs of the AgBioData members in those areas! The survey's results and recommendations are summarized in a white paper now available at doi.org/10.48550/arXiv…
Excellent presentation, @RoseAMarks1! If you miss her webinar, you can watch it again here youtu.be/gYlHzs1ziG0. It will give you another perspective on publishing in plant science and thoughts on being more inclusive.
Join the AgBioData working group today! @RoseAMarks1 will present her recent work on inequalities in plant science literature recently published on PNAS doi.org/10.1073/pnas.2…. Zoom link in the #general channel on AgBioData Slack agbiodata.org/join-slack
Thanks @sarahlippincott for the great webinar and discussion! In case you missed it, you can watch it again on our YouTube channel youtu.be/3XkeYgNSLTQ.
youtube.com
YouTube
How generalist and specialist repositories can work together to...
Time to advertise our monthly speaker! Next Wed. @sarahlippincott will discuss @datadryad and how to integrate generalist and specialist repositories to promote #agricultural #data sharing and reuse. 🗓️ July 12th, 12 PM CT How to join: agbiodata.org/user/register
The BAR's @AsherPasha has updated and upgraded Thalemine to version v5.1.0-20230710. This includes InterMine software v5.1.0 and data as of July 10, 2023. Check it out at bar.utoronto.ca/thalemine ! #Arabidopsis #PlantBio #Bioinformatics
Don't miss our webinar tomorrow at 12 PM CT 🗓️!! @sarahlippincott @datadryad
Time to advertise our monthly speaker! Next Wed. @sarahlippincott will discuss @datadryad and how to integrate generalist and specialist repositories to promote #agricultural #data sharing and reuse. 🗓️ July 12th, 12 PM CT How to join: agbiodata.org/user/register
Time to advertise our monthly speaker! Next Wed. @sarahlippincott will discuss @datadryad and how to integrate generalist and specialist repositories to promote #agricultural #data sharing and reuse. 🗓️ July 12th, 12 PM CT How to join: agbiodata.org/user/register
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