RandomMutation's profile picture. Spatial genomics scientist in Next Level Genomics, based in GIS, Singapore

Ufuk Degirmenci

@RandomMutation

Spatial genomics scientist in Next Level Genomics, based in GIS, Singapore

Ufuk Degirmenci reposted

👨‍🔬 S’pore researchers receive $25m grant to tackle lung cancer in Asian patients Researchers have received a $25 million grant to work on tackling lung cancer in Asian patients across all stages – from risk prediction and early detection of those who are at risk, to personalised…

astar_gis's tweet image. 👨‍🔬 S’pore researchers receive $25m grant to tackle lung cancer in Asian patients

Researchers have received a $25 million grant to work on tackling lung cancer in Asian patients across all stages – from risk prediction and early detection of those who are at risk, to personalised…

Ufuk Degirmenci reposted

This has been a massive undertaking since I started #chualabnccs 7y ago! So pleased to see our work published @CellCellPress where we posit a novel model that #TIME delineates progression trajectories of distinct #NPC phenotypes: cell.com/cell-reports-m… Thanks to everyone and…


Ufuk Degirmenci reposted

1🔬/ Excited to share our latest preprint led by @ShuxiaoC , @Shenggao10 , @GarryPNolan , @SizunJ , @ZongmingMa , and with help from @shaleklab, Scott and more! biorxiv.org/content/10.110…

ZhuBokai's tweet image. 1🔬/ Excited to share our latest preprint led by @ShuxiaoC , @Shenggao10 , @GarryPNolan , @SizunJ , @ZongmingMa , and with help from @shaleklab, Scott and more! biorxiv.org/content/10.110…

Each core looks like a Christmas tree decorations!


We are at spatial genomic congress at LKC. #Visit us at booth 14

RandomMutation's tweet image. We are at spatial genomic congress at LKC. 
#Visit us at booth 14
RandomMutation's tweet image. We are at spatial genomic congress at LKC. 
#Visit us at booth 14

Ufuk Degirmenci reposted

Our new study is now published at @NatureBiotech as open access. What is in it? Online Whole-Body Mouse Atlases, tertiary lymphatic structures (TLS) in the whole mouse along cancer, and more. Meet wildDISCO, thread 👇🏼 nature.com/articles/s4158…

erturklab's tweet image. Our new study is now published at @NatureBiotech as open access. What is in it? Online Whole-Body Mouse Atlases, tertiary lymphatic structures (TLS) in the whole mouse along cancer, and more. Meet wildDISCO, thread 👇🏼
nature.com/articles/s4158…

They put the wraith cus she is an established name so people would favor the proposal. Classic

“For this proposal, we have assembled an interdisciplinary team with a wide range of methodological expertise”

wmkenkel's tweet image. “For this proposal, we have assembled an interdisciplinary team with a wide range of methodological expertise”


Ufuk Degirmenci reposted

It’s been a rough week…#help me from being stuck at this ominous number of followers maybe it will help turn this lady’s luck around. Just one more follower please 🤪especially if you care about #cancer #sequencing #omics #spatial #singlecell #methods @AcademicChatter @PhD_Genie

DrJasPlummer's tweet image. It’s been a rough week…#help me from being stuck at this ominous number of followers maybe it will help turn this lady’s luck around. Just one more follower please 🤪especially if you care about #cancer #sequencing #omics #spatial #singlecell #methods @AcademicChatter @PhD_Genie

Your ROI are done today, second round!

RandomMutation's tweet image. Your ROI are done today, second round!

Abcam spatial conference happening at academia over two days, will be followed by 2 days of spatial workshop. I found Tricia’s talk very interesting. It is always fun to see different fields collaborate

RandomMutation's tweet image. Abcam spatial conference happening at academia over two days, will be followed by 2 days of spatial workshop.
I found Tricia’s talk very interesting. It is always fun to see different fields collaborate

Daily dose of prettt images

RandomMutation's tweet image. Daily dose of prettt images

We are trained for CosMx. It is running the training data now. Looking forward to playing with our data in AtoMx tho. #nanostring #cosmx #smi

RandomMutation's tweet image. We are trained for CosMx. It is running the training data now. Looking forward to playing with our data in AtoMx tho. 
#nanostring #cosmx #smi

Ufuk Degirmenci reposted

Working or thinking of working on Spatial-Omics? Wanna meet up with others like you around around the world to discuss the state-of-the-art and the non-marketing truths of current commercial techs, wanna exchange notes? Cool then…PM me and you are set. 😁 Plz RT #spatialomics


Nice, I tried matsunami pro slide recently, it performed better than Leica adhesive slides

Yes, they are charged slides.. They have some recommended slide options, one of which is VWR Superfrost plus and what’s what we used



Not charged/adhesive slide? I thought any slide could be used

Yup onto a plain glass slide.. But the size of tissue can be bigger than the capture area



But don’t you still need to place tissues into a small region first?

So now ur telling me all the months of practicing placing tissues into Visium capture areas can be replaced by a CytAssist ? 😅 Fun training session with @10xGenomics using CytAssist on our HCC samples !!

rheapai1's tweet image. So now ur telling me all the months of practicing placing tissues into Visium capture areas can be replaced by a CytAssist ? 😅 Fun training session with @10xGenomics using CytAssist on our HCC samples !!
rheapai1's tweet image. So now ur telling me all the months of practicing placing tissues into Visium capture areas can be replaced by a CytAssist ? 😅 Fun training session with @10xGenomics using CytAssist on our HCC samples !!


I know a Merlin’s trial when I see one #HogwartsLegacy

If you sequence every forest gene and give them to a machine learning it will always give you back this pattern and no one knows why

SynBio1's tweet image. If you sequence every forest gene and give them to a machine learning it will always give you back this pattern and no one knows why


CosMx is in the box, dying to open it ☠️!! #CosMx #NSTG #Spatial #SG more about us at spatialifestrands.com

RandomMutation's tweet image. CosMx is in the box, dying to open it ☠️!! #CosMx #NSTG #Spatial #SG
more about us at spatialifestrands.com

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