RepeatExplorer
@RepeatExplorer
A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
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Registration open to the 12th @RepeatExplorer Workshop (May 27-29), this year focusing on repeat annotation in genome assemblies ! repeatexplorer.org/?page_id=14
Excited to share our tools for LTR-retrotransposon annotation in plant genomes ! Supported by @ELIXIRCZ. doi.org/10.1093/nargab…
DANTE and DANTE_LTR: computational pipelines implementing lineage-centered annotation of LTR-retrotransposons in plant genomes. doi.org/10.1101/2024.0…
Happy to share this nice collaborative work led by the very talented grad student @YMata_Sucre Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae) authors.elsevier.com/c/1hpxi3m3nNAE…
The spread of satellite DNAs in euchromatin and insights into the multiple sex chromosome evolution in Hemiptera revealed by repeatome analysis of the bug Oxycarenus hyalinipennis - Cabral‐de‐Mello - Insect Molecular Biology - Wiley Online Library resjournals.onlinelibrary.wiley.com/doi/10.1111/im…
resjournals.onlinelibrary.wiley.com
The spread of satellite DNAs in euchromatin and insights into the multiple sex chromosome evolution...
The genomic analysis revealed a male-biased abundance of satellite DNAs (satDNAs) in the bug Oxycarenus hyalinipennis. The complementary chromosomal analysis by fluorescence in situ hybridization...
@CamilleCornet17 1st thesis paper is out @molecology: #Holocentric repeat landscapes: From micro-evolutionary patterns to macro-evolutionary associations with karyotype evolution 👉 onlinelibrary.wiley.com/doi/full/10.11…
Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
So pleased to be funded by the @ELIXIREurope Travel Grant Scheme to present a demo at the @RepeatExplorer workshop with the computing facilities from @INRAE_URGI #PlantBioinfoPF and @ELIXIRCZ.
🔥ADVANCE ACCESS🔥: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae) doi.org/10.1093/aob/mc…
Register to the @RepeatExplorer workshop which will take place on May 23-25 ! This year also featuring the REPET pipeline presented by @JohannConfais. More info and registration: repeatexplorer.org/?page_id=14
Happy to share our latest work on the disruption of the standard #kinetochore in #holocentric #Cuscuta plants: doi.org/10.1101/2023.0…
Phylogenetic relationships and repeatome analysis in the South African genus Pteronia: frontiersin.org/articles/10.33… @IBOTCZ @CEITEC_Brno @sci_muni
RepeatExplorer demo by Petr Novák! @RepeatExplorer repeatexplorer-elixir.cerit-sc.cz #UppTransposon2022
A giant, multi-domain #centromere of garden pea assembled ! Check out our preprint doi.org/10.1101/2022.1…
Great collaboration with the excellent team led by @marques_et_al ! Supported by @ELIXIRCZ and #GACR.
There are many more exciting findings in our paper! Please read n' share! We conclude that transition to holocentricity has contributed to a reorganization of the genome architecture and allowed chromosomes to evolve under different constrains as for monocentric organisms! [13/]
![marques_et_al's tweet image. There are many more exciting findings in our paper! Please read n' share!
We conclude that transition to holocentricity has contributed to a reorganization of the genome architecture and allowed chromosomes to evolve under different constrains as for monocentric organisms! [13/]](https://pbs.twimg.com/media/FZTFZGiWYAAaK7C.jpg)
Happy to share our new paper published in @MolBiolEvol: Repeat dynamics across timescales: a perspective from sibling allotetraploid marsh #orchids doi.org/10.1093/molbev… #polyploidy #transposableElements #mobileDNA @CeciliaMimmi 1st author, @TeriMandakova, @__mcjamie__ & others
The #ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity @RowanSchley @cfbarrett999 @SidonieBellot @RepeatExplorer @BillJBaker @DrSDodsworth @leitch_ar @IliaLeitch ow.ly/QYWI50JVNTJ
Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales) @ThePlantJournal onlinelibrary.wiley.com/doi/10.1111/tp… @CEITEC_Brno @sci_muni @muni_cz
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