SettyM's profile picture. Assistant Professor, @fredhutch @HutchBasicSci & Translational Data Science IRC. Computational biologist | Single-cell data analysis and modeling.

Manu Setty

@SettyM

Assistant Professor, @fredhutch @HutchBasicSci & Translational Data Science IRC. Computational biologist | Single-cell data analysis and modeling.

Pinned

Very excited to have Mellon out in @naturemethods today!

Mellon accurately estimates cell-state densities using high-dimensional single-cell data, unveiling regulatory dynamics and mechanisms in cell differentiation. nature.com/articles/s4159… @SettyM @fredhutch

naturemethods's tweet image. Mellon accurately estimates cell-state densities using high-dimensional single-cell data, unveiling regulatory dynamics and mechanisms in cell differentiation.

nature.com/articles/s4159…

@SettyM @fredhutch


What happens when a high school science teacher spends her summer learning computational biology and coding basics ? Biology and Forensics teacher Dr. Rama Devagupta wrote about her experience in the Setty Lab . Check out our Hutch Teacher Fellowship Blog: Bit.ly/HTFrama


Are you an early career scientist who wants to pursue a research project in the lab of a Fred Hutch Computational Biologist mentor? If yes, then the #MahanFellowship is for you. Apply by Dec. 20, 2024! Learn more: apply.interfolio.com/157470


Manu Setty reposted

Awesome week at Bertinoro #CompBio meeting! Exciting times for cancer evolution x tumor microenvironment! Thank you @SohrabShah @jens_lagergren

elhamazizi's tweet image. Awesome week at Bertinoro #CompBio meeting! Exciting times for cancer evolution x tumor microenvironment! Thank you @SohrabShah @jens_lagergren
elhamazizi's tweet image. Awesome week at Bertinoro #CompBio meeting! Exciting times for cancer evolution x tumor microenvironment! Thank you @SohrabShah @jens_lagergren
elhamazizi's tweet image. Awesome week at Bertinoro #CompBio meeting! Exciting times for cancer evolution x tumor microenvironment! Thank you @SohrabShah @jens_lagergren

Wonderful Bertinoro Computational Biology meeting, Russel Schwarz summarizing a lot of effort going on in the field of modeling tumor biology in the fresco room. Taking place among puring rain around the hill. Thank you for the invitation @SohrabShah @jens_lagergren @elhamazizi

ewa_szczurek's tweet image. Wonderful Bertinoro Computational Biology meeting, Russel Schwarz summarizing a lot of effort going on in the field of modeling tumor biology in the fresco room. Taking place among puring rain around the hill. Thank you for the invitation @SohrabShah @jens_lagergren @elhamazizi


Join us in this exciting symposium to learn about post-doc opportunities at @HutchBasicSci

Calling everyone interested in #postdoc opportunities @HutchBasicSci! Join us at the Pathfinders: Postdoc Recruitment Symposium @FredHutch. Explore our research programs, present your work, and network with current postdocs and faculty. Apply by July 8: fredhutch.org/pathfinders



Terrific work by @danielcjones in @EvNewell1 lab- Proseg is our go-to cell segmentation for all spatial transcriptomics data!

Using in situ spatial transcriptomics? Try Proseg, @danielcjones’s new cell segmentation method based on probabilistic and Cellular Potts modeling. Great for @vizgen_inc Merscope, @10xGenomics Xenium, and @nanostringtech CosMx data. Preprint & code: (1/n) doi.org/10.1101/2024.0…



The #MahanFellowship supports young scientists in the early stages of their careers. We offer fellows a 21-month stipend as they pursue their proposed research project, alongside a mentor in one of our Herbold Computational Biologist labs. Apply today: apply.interfolio.com/130340


Manu Setty reposted

1/8 Today we highlight exciting work from the @SettyM lab that introduces Mellon, a new approach for quantifying cell-state densities from single-cell data with a particular focus on differentiating systems. biorxiv.org/content/10.110…


Manu Setty reposted

Say hello to CellRank 2, a unified framework for data view independent fate mapping! Have a look at our preprint on bioRxiv (bit.ly/470dx1i) and check out @MariusLange8’s tweetorial as well! @HelmholtzMunich @CompHealthMuc @TU_Muenchen @fabian_theis @dana_peer (1/14)


Deadline this Friday!

Calling all PhD (or equivalent) students within 2 years of graduation or who have graduated in the last year: Join us for an opportunity to visit with faculty at @FredHutch and hear about career opportunities at this world-renowned institution:fredhutch.org/en/events/prim…



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