A fossil fungus discovered in Scotland shows evidence of plants and fungi sharing nutrients to survive. The fossil, more than 400 million years old, offers hints about the origin of one of the greatest partnerships in the history of life on Earth. nhm.ac.uk/discover/news/…
gggenomes: A Grammar of Graphics for Comparative Genomics thackl.github.io/gggenomes/ #Rstats
MpNPR modulates lineage-specific oil body development and defence against gastropod herbivory in Marchantia polymorpha biorxiv.org/content/10.110… #biorxiv_plants
Nature research paper: Convergent genome evolution shaped the emergence of terrestrial animals go.nature.com/4qX6KiM
Our new discovery that bacteria utilize extracellular vesicles to deliver RNAs into fungi substantially broadens the paradigm of Cross-Kingdom RNA communication! Big congrats to @J_NinoSanchez, @HuaitongW and all! Thanks for your hard work! cell.com/molecular-plan…
Excited to share our spotlight review on mycorrhiza-mediated pathogen resistance! 🍅🌱🍄🟫
Advanced imaging reveals arbuscular mycorrhizas in 407-million-year-old plant from Scotland @NewPhytologist @dromius @FFercoq @victorleshyk doi.org/10.1111/nph.70…
Evolution of molecular communication in the permanent Azolla symbiosis nph.onlinelibrary.wiley.com/doi/10.1111/np…
Nice paper in @ScienceMagazine apparently showing for the first time that DNA breaks leave lasting epigenetic scars Excitingly, it’s consistent with The Information Theory of Aging & our discovery of this same phenomenon in 1997, 1999, 2008 & 2023 🤣👏🧵 science.org/doi/pdf/10.112…
#TansleyReview: #Leaf #evolution: integrating phylogenetics, developmental dynamics, and genetic insights across land #plants Hokuto Nakayama & Neelima R. Sinha 👇 📖 nph.onlinelibrary.wiley.com/doi/10.1111/np… #LatestIssue
Mycelial dynamics in arbuscular mycorrhizal fungi nph.onlinelibrary.wiley.com/doi/10.1111/np…
PlantScience.ai: An LLM-Powered Virtual Scientist for Plant Science biorxiv.org/content/10.110… #biorxiv_plants
In vivo RNA structure influences the translation and stability of plant long noncoding RNAs #research #PlantCommunications cell.com/plant-communic…
🔥 It's here: OpenFold3 is now live. THE open-source foundation model for predicting 3D structures of proteins, nucleic acids & small molecules. This is where the future of drug discovery and biomolecular AI lives. Built by @open_fold. Hosted on @huggingface. 👇 more
The first preprint from our lab! In vitro evaluation of protein–protein interactions in the rice KAI2 ligand signaling complex biorxiv.org/content/10.110…
ProteinDJ: A High-Performance and Modular Protein Design Pipeline 1. ProteinDJ is a groundbreaking protein design pipeline that leverages artificial intelligence and deep learning to generate de novo proteins, significantly accelerating the discovery process. This pipeline is…
Encode oligos as chemistry, not just strings. HELM→SMILES→MAP4 seems to match sequence-only approaches to predict siRNA efficacy. But, it generalizes to chemically modified oligonucleotides, where sequence-only baselines don’t work.
Genomic and Transcriptomic Insights into the Evolution and Parasitic Strategy of the Woody-Plant Nematode Pratylenchus vulnus biorxiv.org/content/10.110… #biorxiv_plants
Predicting protein-protein interactions in the human proteome science.org/doi/10.1126/sc…
SIDPT: siRNA Efficacy Prediction via Debiased Preference-Pair Transformer 1. A novel study proposes a novel framework named siDPT for predicting siRNA efficacy. This method leverages a debiased preference-pair transformer to enhance the prediction of siRNA inhibition rates,…
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