Yusuke Okazaki
@yokadzaki
湖に生息する微生物の研究をしてます。 Working on aquatic microbial ecology in Japan.
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Excited that our paper on the freshwater SAR11 clade (previously known as Fonsibacter, now Fontibacterium) is now out. nature.com/articles/s4156… Great work by Clafy Fernandes - the first first-author paper of her thesis - and the whole team and collaborators. More to come soon :)
優秀な日本人にも進学してもらうにはどうしたら良いかを考えるべきなのに優劣関係なく国籍で切り落とすのは意味が分からなさすぎるし現場を見てなさすぎる yomiuri.co.jp/kyoiku/kyoiku/…
Now published in ISME Communications! academic.oup.com/ismecommun/adv…
Posted a new preprint! Exploration of viral signals in SAGs of lake bacterioplankton community revealed novel virus-host pairs and the broad range of viral infection rate depending on the host's ecological strategy: biorxiv.org/content/10.110…
研究室のZhaoさんらの論文です。dsDNAウイルスの類似配列領域を真核生物の全ての系統のゲノムデータ中に徹底的に探索しました。最大16%のゲノム領域がdsDNAウイルス類似配列の例もあり、これまでに知られていないウイルスと宿主の関係が多数浮き彫りになりました。biorxiv.org/content/10.110…
特定研究員2名の公募です（2025年4月着任）。 京都大学化学研究所@宇治キャンパスで、バイオインフォマティクス研究に取り組んでいただく研究員を公募しております。研究内容について事前にご相談いただくこともできます。奮ってご応募ください！
比較ゲノム解析ツール DiGAlign の紹介動画が、「統合TV」で公開されました！ 「DiGAlign を使ってゲノムの変化を可視化する」 togotv.dbcls.jp/20241022.html DiGAlignは、最大300ゲノムの大規模な比較ゲノム解析ができるWebサーバーで（無料）、簡単に使えます！ genome.jp/digalign/
Now published in The ISME Journal! academic.oup.com/ismej/advance-…
Our new preprint is out! We reported>280 novel giant virus genomes and their spatiotemporal distribution in Lake Biwa using seasonal long-read metagenomics, including hypolimnion-specific GV lineages and the first freshwater Mirusvirus genomes. biorxiv.org/content/10.110…
Posted a new preprint! Exploration of viral signals in SAGs of lake bacterioplankton community revealed novel virus-host pairs and the broad range of viral infection rate depending on the host's ecological strategy: biorxiv.org/content/10.110…
DAY 3 of #VoM2024 Our Viral Ecology Session connects the dots between viruses, microbes, and their ecosystems. Our invited speaker Prof Debbie Lindell starts with a view into cyanophage hotspots✨ Followed by selected talks by @yogihooda88, @SarahWater10 & @yokadzaki!
Our new preprint! Using two years of seawater metagenomes, we generated 1,065 giant virus genomes and found that viruses with broader niche breadth tended to have greater microdiversity. Additionally, year-round recovery patterns were observed in the viral microdiveristy.
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity biorxiv.org/cgi/content/sh… #biorxiv_micrbio
新しいアーキアの「界」プロメテアーカエアティについてのブログ記事がでました。これは英語で、どちらかというと研究者向けに書いた記事になります。日本語の記事については準備中です。 microbiologysociety.org/blog/appreciat…..
annualreviews.org/content/journa… The diversity of gene pools carried by different strains of bacteria is maintained due to the control exercised by viral predation that maintains a high strain diversity and facilitates the degradation of dissolved organic matter in the ocean.
We traced #photosynthesis deep into the history of #Bacteria & #Earth! Vertical #evolution in Terrabacteria, a non-O2-generating origin, later rise of O2 generation and even later Cyanobacteria, & more. On PNAS w @thermo_microbes @tsuka_pennstate @PNASNews pnas.org/doi/10.1073/pn…
A bacterium that can’t make its own cell wall without a partner!? Our new isolate from the uncultured phylum Marinimicrobia/SAR406/Marine Group A/Marinisomatota #bacteria #microbiology #ecology doi.org/10.1038/s41564…
Extracellular rRNA profiling reveals the sinking and cell lysis dynamics of marine microeukaryotes biorxiv.org/cgi/content/sh… #biorxiv_ecology
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