#bioformats search results
The #CellACDC team wishes you a great 2022 with the release of Cell-ACDC v1.2.2, the first release with full support for macOS users, including #BioFormats! We released a bunch of new cool features, like the magic wand, perfect for the segmentation of fluorescent images!
How do we handle datasets that are 10 Petabytes or larger? In an excellent talk, Josh Moore @notjustmoore explained the OME.Zarr file format that will make it easier to take our data & our metadata to the cloud ☁️🔬. #OMEZarr #NGFF #Bioformats @GerBI_GMB @openmicroscopy @zarr_dev
How to make #BioFormats/#bfmatlab work with NIS 5.0.2 nd2? Just disable the nativend2.chunkmap in bfGetReader.m with an API call: s=javaObject('loci.formats.in.DynamicMetadataOptions'); s.set('nativend2.chunkmap', 'false'); r.setMetadataOptions(s); gajdicookbook.wordpress.com/2018/05/20/nis…
![openmicroscopy's profile picture. The Open #Microscopy Environment - #opensource #image tools. Project news, #imaging, #bigdata, #openscience stories & more. [OME logo TM Glencoe Software, Inc.]](https://pbs.twimg.com/profile_images/430266361785229313/MU4Sx0sn.png)
Dec 1: Webinar from @GlencoeSoftware buff.ly/1NPHi8r #OMERO #bioformats #PathViewer #digitalpathology
#BioFormats is opened >100K/day. Help secure its future with a letter of support by Feb 26: buff.ly/1oIXpv4
Heyo! Some #microscopy tools for the #community from my friend @JianTay1 at @CUBoulder : First, a new #bioformats #matlab package written with ease of use in mind: github.com/Biofrontiers-A… Second, a #toolbox for tracking moving and dividing cells: github.com/Biofrontiers-A…
#javabridge #bioformats #github #ipython #numpy #matplotlib It's like a pizza with everything on it: gist.github.com/LeeKamentsky/6…
Lots of Im Proc libraries included in @knime including #BioFormats #SciJava #ImageJ2. Also, #Clearvolume! tech.knime.org/community/imag… #NEUBIAS
Happy Birthday OME team (@openmicroscopy @bioformats) Amazing work! I feel very lucky working with such a great people for last 13 years! #omero #bioformats #microscopy #imaging #bigdata #openscience
It's the end of another work week for OME Europe. If you can, raise a 🥂 on Sunday to 20 years of openmicroscopy.org. It wouldn't be what it is without you!
Bio-Formats 6.1 Release Introduces 12-Bit FLI-File Support lambertinstruments.com/news-items/201… #ImageJ #BioFormats
Wondering when the next #BioFormats update is coming? The 5.1.9 PR freeze is in - not much longer to wait now.
So #clij is compatible to #bioformats because both are compatible to @FijiSc 😉 You know @FijiSc is the melting pot of all the good stuff 😏
#BioFormats #ImageJ #Fiji @LeicaMicro tip of the day for opening files from LAS(X) e.g. SP8 or Stellaris. The image name keeps ".lif" annoyingly in the middle. Use this one line of macro code to clean it up. rename(replace(getTitle, ".lif", ""));
Hanging out in Basel at the SIBS 2015 meeting! Talking #OMEROPlus #OMERO @openmicroscopy and #BioFormats for Image Based Screening
#Bioformats #Library marshut.net/kqvkkz/run-scr… Run script from external app within spyder
#Digitalpathology is rapidly growing and also evolving. Read more about it on our latest post on Open Data for Digital Pathology: glencoesoftware.com/blog/2019/05/3… #opendata #bioformats
#BioFormats 5.0.8 now available - no code changes, just keeping numbers in sync with #OMERO: openmicroscopy.org/community/view… …
Sad to leave #ParisOfTheNorth but what a great meeting with the @openmicroscopy team and users regarding #OMERO & #BioFormats
How do we handle datasets that are 10 Petabytes or larger? In an excellent talk, Josh Moore @notjustmoore explained the OME.Zarr file format that will make it easier to take our data & our metadata to the cloud ☁️🔬. #OMEZarr #NGFF #Bioformats @GerBI_GMB @openmicroscopy @zarr_dev
#BioFormats #ImageJ #Fiji @LeicaMicro tip of the day for opening files from LAS(X) e.g. SP8 or Stellaris. The image name keeps ".lif" annoyingly in the middle. Use this one line of macro code to clean it up. rename(replace(getTitle, ".lif", ""));
The #CellACDC team wishes you a great 2022 with the release of Cell-ACDC v1.2.2, the first release with full support for macOS users, including #BioFormats! We released a bunch of new cool features, like the magic wand, perfect for the segmentation of fluorescent images!
Heyo! Some #microscopy tools for the #community from my friend @JianTay1 at @CUBoulder : First, a new #bioformats #matlab package written with ease of use in mind: github.com/Biofrontiers-A… Second, a #toolbox for tracking moving and dividing cells: github.com/Biofrontiers-A…
Always exciting to see advances in #Imaging file formats, but can anyone highlight the key advantage of #AICSImageIO over @openmicroscopy #BioFormats library? It looks to do a similar thing without the advantages of #Metadata parsing. (h/t @CCI_liv)
🔬 Different microscopes output different image file formats making it challenging for scientists to compare. That's why we developed an #openscience software to help level the playfield. #microscopy alleninstitute.org/what-we-do/cel…
Common file formats will be a general theme here. It is a major problem in image analysis #bioimageanalysis; every vendor has their own proprietary format. Great work has been done by the #bioformats team @bioformats to improve this situation, but they can't cover everything.
Happy Birthday OME team (@openmicroscopy @bioformats) Amazing work! I feel very lucky working with such a great people for last 13 years! #omero #bioformats #microscopy #imaging #bigdata #openscience
It's the end of another work week for OME Europe. If you can, raise a 🥂 on Sunday to 20 years of openmicroscopy.org. It wouldn't be what it is without you!
So #clij is compatible to #bioformats because both are compatible to @FijiSc 😉 You know @FijiSc is the melting pot of all the good stuff 😏
#Digitalpathology is rapidly growing and also evolving. Read more about it on our latest post on Open Data for Digital Pathology: glencoesoftware.com/blog/2019/05/3… #opendata #bioformats
Bio-Formats 6.1 Release Introduces 12-Bit FLI-File Support lambertinstruments.com/news-items/201… #ImageJ #BioFormats
I also find a lot of people don't know #Bioformats can go "windowless" for any selected format. Meaning macros can loop without bringing up the window for each file.
Where are you guys?! I was already discussing/recommending #bioformats and @openmicroscopy in various discussions
Fresh from #ome2018, the team is off to @VisitDublin for #elmi2018 -- Stop by one of the #OMERO workshops Thursday at 14:34 and 16:00 to talk about your 🔬 #data. elmi2018.eu/programme/work…
How to make #BioFormats/#bfmatlab work with NIS 5.0.2 nd2? Just disable the nativend2.chunkmap in bfGetReader.m with an API call: s=javaObject('loci.formats.in.DynamicMetadataOptions'); s.set('nativend2.chunkmap', 'false'); r.setMetadataOptions(s); gajdicookbook.wordpress.com/2018/05/20/nis…
Lots of Im Proc libraries included in @knime including #BioFormats #SciJava #ImageJ2. Also, #Clearvolume! tech.knime.org/community/imag… #NEUBIAS
#Bioformats is a widely used #Java library for reading & writing image data openmicroscopy.org/site/products/… (3/n)
Sad to leave #ParisOfTheNorth but what a great meeting with the @openmicroscopy team and users regarding #OMERO & #BioFormats
We are delighted to announce the incorporation of #BioFormats by @GlencoeSoftware into #FEI #Amira @feicompany: buff.ly/23RFZLT
Wondering when the next #BioFormats update is coming? The 5.1.9 PR freeze is in - not much longer to wait now.
How do we handle datasets that are 10 Petabytes or larger? In an excellent talk, Josh Moore @notjustmoore explained the OME.Zarr file format that will make it easier to take our data & our metadata to the cloud ☁️🔬. #OMEZarr #NGFF #Bioformats @GerBI_GMB @openmicroscopy @zarr_dev
How to make #BioFormats/#bfmatlab work with NIS 5.0.2 nd2? Just disable the nativend2.chunkmap in bfGetReader.m with an API call: s=javaObject('loci.formats.in.DynamicMetadataOptions'); s.set('nativend2.chunkmap', 'false'); r.setMetadataOptions(s); gajdicookbook.wordpress.com/2018/05/20/nis…
Dec 1: Webinar from @GlencoeSoftware buff.ly/1NPHi8r #OMERO #bioformats #PathViewer #digitalpathology
#BioFormats is opened >100K/day. Help secure its future with a letter of support by Feb 26: buff.ly/1oIXpv4
Heyo! Some #microscopy tools for the #community from my friend @JianTay1 at @CUBoulder : First, a new #bioformats #matlab package written with ease of use in mind: github.com/Biofrontiers-A… Second, a #toolbox for tracking moving and dividing cells: github.com/Biofrontiers-A…
Lots of Im Proc libraries included in @knime including #BioFormats #SciJava #ImageJ2. Also, #Clearvolume! tech.knime.org/community/imag… #NEUBIAS
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