#codonusage search results
Welcome to the world of codons. Excited to attend my first PhD conference on codon usage. #EMBO_CU22 #codonusage
#CodonUsage peeps we love CodonW but parsing the output codon table is onerous. I wrote a python program that computes the relative synonymous codon Usage (RSCU) of each CDS and outputs a clean analysis-ready 61 x n (cds) table. github.com/rhondene/Codon…
Yi Liu kicking off the 2nd edition of the #CodonUsage workshop in beautiful #Edinburgh! It's all about building a community for scientists from incredibly diverse backgrounds. Looking forward to a fantastic lineup this year!
While the #RNA world is streaming towards Edinburgh, I'm on the plane back home after a fantastic 2nd edition of the #CodonUsage workshop! I'm incredibly proud to still be part of such a scientifically diverse community & cannot wait to see all the amazing science emerging soon!
Which Yeasts are Xylose Beasts? New work from myself @RokasLab @HittingerLab @KtlnFisher @DOpulente & UG trainees shows how #codonusage is better than gene content at predicting xylose catabolism - which is critical in biofuels development #3rdBaseThurs biorxiv.org/content/10.110…
#Codonusage bias and #purifyingselection identified in Cirrhinus reba #mitogenome bsmiab.org/jabet/178-1652…
Coevolution of viruses and their hosts: Infection can affect #codonusage bias 🦠 #CitedEnsembl @NatureEcoEvo buff.ly/2Q1HsAf #evolution #virology
Yi Liu takes us on a deep dive into the influence of #codonusage on transcription and translation.. implications for troubleshooting heterologous expression‽ #fungal19 #UhOh
Codon Statistics Database: a Database of Codon Usage Bias. #CodonUsage #CodonStats @MolBioEvol academic.oup.com/mbe/advance-ar…
academic.oup.com
The Codon Statistics Database: A Database of Codon Usage Bias
Abstract. We present the Codon Statistics Database, an online database that contains codon usage statistics for all the species with reference or represent
Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts 🔗buff.ly/3k6ehf1 ✏️By Milana Frenkel-Morgenstern and colleagues @ubarilan @AzrieliOf #COVID19 #SARSCoV2 #codonusage
Great work by Hammel et al. (2024) on demonstrating the impact of #CodonUsage on the efficiency of nuclear transgene expression (e.g. YFP 🔆) in the red alga #Porphyridium purpureum and its efficient recombinant protein secretion into the culture medium. 🔗link.springer.com/article/10.100…
I've not seen this one advertised on twitter yet, so here it comes: 🚨 The 2nd workshop on #CodonUsage is happening again in beautiful Edinburgh and the speaker line up is absolutely fantastic! 🚨 Check it out 👇 sites.google.com/view/codonconf…
Online now: In this study, the #chloroplast genomes in nine #Gynostemma species were analyzed systematically to explore the factors affecting the formation of #codonusage bias. @CUHKMedicine @PKU1898 @SpringerPlants link.springer.com/article/10.100…
Very happy to see our newest paper based on my PhD work on #codonusage finally online! Great collaboration between researchers at @mrc_hgu and @MilnerCentre. Splicing buffers suboptimal codon usage in human cells biorxiv.org/content/early/…
Our paper is out! :-) Codon usage signatures across species are not just consequence of GC content - and these biases can be used for metagenomic binning! #codonusage #metagenome @manoliskellis academic.oup.com/mbe/advance-ar…
academic.oup.com
Elucidation of Codon Usage Signatures across the Domains of Life
Abstract. Because of the degeneracy of the genetic code, multiple codons are translated into the same amino acid. Despite being “synonymous,” these codons
Excited to be attending #RNAStrBio20 @EMBO_YIP ! Greg will be presenting some of our recent work on #codonusage in viruses and @LauraCanoAroca her work on codon optimisation using factorial design of experiments! 😀
In the paper we present a new metric for quantifying virus dinucleotide representation under a null hypothesis of equal synonymous codon usage. #dinucleotides #codonusage
just submitted our poster for printing #CodonUsage #PSBMB2019... onwards to other admin and research stuff
Check out our latest #CodonUsage paper @NatureComms ! First author: @rkstewart89 , with collaborators @alaederach and @pelincvolkan ! We identify the CPEB RNA binding protein Orb2 as key to rare codon expression during neural stem cell differentiation. rdcu.be/dLowS
#Codonusage bias and #purifyingselection identified in Cirrhinus reba #mitogenome bsmiab.org/jabet/178-1652…
Unveiling codon usage patterns across diverse plant lineages! Explore how evolutionary forces shape genetic coding in plants. Check out our latest study: [rdcu.be/eaDhH] #PlantGenomics #CodonUsage #EvolutionaryBiology #PlantScience #MolecularGenetics
We further show that so-called "silent" mutations in the receptor mGluR alter fly behavior, underscoring an important role for #Codonusage in neurons.
Check out our latest #CodonUsage paper @NatureComms ! First author: @rkstewart89 , with collaborators @alaederach and @pelincvolkan ! We identify the CPEB RNA binding protein Orb2 as key to rare codon expression during neural stem cell differentiation. rdcu.be/dLowS
While the #RNA world is streaming towards Edinburgh, I'm on the plane back home after a fantastic 2nd edition of the #CodonUsage workshop! I'm incredibly proud to still be part of such a scientifically diverse community & cannot wait to see all the amazing science emerging soon!
Yi Liu kicking off the 2nd edition of the #CodonUsage workshop in beautiful #Edinburgh! It's all about building a community for scientists from incredibly diverse backgrounds. Looking forward to a fantastic lineup this year!
Great work by Hammel et al. (2024) on demonstrating the impact of #CodonUsage on the efficiency of nuclear transgene expression (e.g. YFP 🔆) in the red alga #Porphyridium purpureum and its efficient recombinant protein secretion into the culture medium. 🔗link.springer.com/article/10.100…
I've not seen this one advertised on twitter yet, so here it comes: 🚨 The 2nd workshop on #CodonUsage is happening again in beautiful Edinburgh and the speaker line up is absolutely fantastic! 🚨 Check it out 👇 sites.google.com/view/codonconf…
Happy to share our work exploring the role of A/T-ending codons across species, tissues, development, gene families and protein complexes🧬🦧🧠 👉bit.ly/cellsystems @CRGenomica @lab_serrano with @mirimiam @weghornlab @MartinHSchaefer #codonusage #rasgenes @CellSystemsCP
Glad to share our new published paper #codon #codonusage #codonusagebias #prokaryoticgenomics #molecularevolution link.springer.com/article/10.100…
Codon Statistics Database: a Database of Codon Usage Bias. #CodonUsage #CodonStats @MolBioEvol academic.oup.com/mbe/advance-ar…
academic.oup.com
The Codon Statistics Database: A Database of Codon Usage Bias
Abstract. We present the Codon Statistics Database, an online database that contains codon usage statistics for all the species with reference or represent
Which Yeasts are Xylose Beasts? New work from myself @RokasLab @HittingerLab @KtlnFisher @DOpulente & UG trainees shows how #codonusage is better than gene content at predicting xylose catabolism - which is critical in biofuels development #3rdBaseThurs biorxiv.org/content/10.110…
Welcome to the world of codons. Excited to attend my first PhD conference on codon usage. #EMBO_CU22 #codonusage
Please check our recent work on the Temporal evolution and adaptation of SARS-CoV-2 codon usage imrpress.net/journal/FBL/27… @GeorgakilasAlex #georgakilaslab #codonusage #SARSCoV2 #Bioinformatics
Online now: In this study, the #chloroplast genomes in nine #Gynostemma species were analyzed systematically to explore the factors affecting the formation of #codonusage bias. @CUHKMedicine @PKU1898 @SpringerPlants link.springer.com/article/10.100…
Mutated oncogenes & the importance of codons: We revisit this recommendation by Chava Kimchi-Sarfaty, Douglas Meyer, and Upendra Katneni of @MartinHSchaefer @_BIST in @PNASNews #oncogenes #cancergenetics #codonusage facultyopinions.com/prime/73904891…
Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts 🔗buff.ly/3k6ehf1 ✏️By Milana Frenkel-Morgenstern and colleagues @ubarilan @AzrieliOf #COVID19 #SARSCoV2 #codonusage
#CodonUsage peeps we love CodonW but parsing the output codon table is onerous. I wrote a python program that computes the relative synonymous codon Usage (RSCU) of each CDS and outputs a clean analysis-ready 61 x n (cds) table. github.com/rhondene/Codon…
Identification of conserved slow codons that are important for protein expression and function. #CodonUsage #ProteinExpression tandfonline.com/doi/full/10.10… #RNABiologyJournal
tandfonline.com
Identification of conserved slow codons that are important for protein expression and function
Due to the redundancy of the genetic code most amino acids are encoded by several ‘synonymous‘ codons. These codons are used unevenly, and each organism demonstrates its own unique codon usage bias...
It took a bit of convincing, but the Kudla lab @mrc_hgu is now on twitter‼️ #RNA #syntheticbiology #codonusage 👇Tweets by the mastermind himself👇
Which mutations change the colour, fluorescence intensity and metal ion binding of an RNA-ligand complex? Olga Puchta collected 7 million genotype-phenotype associations to find out. Well done Olga, Greg, Graeme, @jmbujnicki @doyarzunrod @dynafluors! biorxiv.org/content/10.110…
Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts 🔗buff.ly/3k6ehf1 ✏️By Milana Frenkel-Morgenstern and colleagues @ubarilan @AzrieliOf #COVID19 #SARSCoV2 #codonusage
Which Yeasts are Xylose Beasts? New work from myself @RokasLab @HittingerLab @KtlnFisher @DOpulente & UG trainees shows how #codonusage is better than gene content at predicting xylose catabolism - which is critical in biofuels development #3rdBaseThurs biorxiv.org/content/10.110…
Coevolution of viruses and their hosts: Infection can affect #codonusage bias 🦠 #CitedEnsembl @NatureEcoEvo buff.ly/2Q1HsAf #evolution #virology
Welcome to the world of codons. Excited to attend my first PhD conference on codon usage. #EMBO_CU22 #codonusage
Yi Liu takes us on a deep dive into the influence of #codonusage on transcription and translation.. implications for troubleshooting heterologous expression‽ #fungal19 #UhOh
Mutated oncogenes & the importance of codons: We revisit this recommendation by Chava Kimchi-Sarfaty, Douglas Meyer, and Upendra Katneni of @MartinHSchaefer @_BIST in @PNASNews #oncogenes #cancergenetics #codonusage facultyopinions.com/prime/73904891…
Yi Liu kicking off the 2nd edition of the #CodonUsage workshop in beautiful #Edinburgh! It's all about building a community for scientists from incredibly diverse backgrounds. Looking forward to a fantastic lineup this year!
Online now: In this study, the #chloroplast genomes in nine #Gynostemma species were analyzed systematically to explore the factors affecting the formation of #codonusage bias. @CUHKMedicine @PKU1898 @SpringerPlants link.springer.com/article/10.100…
While the #RNA world is streaming towards Edinburgh, I'm on the plane back home after a fantastic 2nd edition of the #CodonUsage workshop! I'm incredibly proud to still be part of such a scientifically diverse community & cannot wait to see all the amazing science emerging soon!
#Codonusage bias and #purifyingselection identified in Cirrhinus reba #mitogenome bsmiab.org/jabet/178-1652…
Great work by Hammel et al. (2024) on demonstrating the impact of #CodonUsage on the efficiency of nuclear transgene expression (e.g. YFP 🔆) in the red alga #Porphyridium purpureum and its efficient recombinant protein secretion into the culture medium. 🔗link.springer.com/article/10.100…
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