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#repeatexplorer search results

biomonika's profile picture. I'm enjoying DNA in my computer. Biology is fascinating. Bioinformatics of sequences. She/her. 🇪🇺
Monika Cechova Mich
 @biomonika
May 26, 2022

Love this graphical description of TRIM transposable elements presented by Sonia Garcia at the 10th #RepeatExplorer workshop in #CeskeBudejovice #Bioinformatics

biomonika's tweet image. Love this graphical description of TRIM transposable elements presented by Sonia Garcia at the 10th #RepeatExplorer workshop in #CeskeBudejovice #Bioinformatics
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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
May 25, 2023

Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.

RepeatExplorer's tweet image. Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
RepeatExplorer's tweet image. Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Oct 31, 2023

Our test cases: Test case 1 (green path in map): Long and highly confident repeat consensus sequences from #RepeatExplorer clusters

toheitka's tweet image. Our test cases: Test case 1 (green path in map): Long and highly confident repeat consensus sequences from #RepeatExplorer clusters
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Feb 4, 2024

Our test cases: Test case 1: Long and confident repeat consensus sequences from #RepeatExplorer clusters --> the produced NODEs are more reliable than the cluster contigs 3/9

toheitka's tweet image. Our test cases: Test case 1: Long and confident repeat consensus sequences from #RepeatExplorer clusters --> the produced NODEs are more reliable than the cluster contigs 3/9
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Jan 29, 2019

🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20

toheitka's tweet image. 🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20
toheitka's tweet image. 🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20
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ELIXIRCZ's profile picture. National Node of #bioinformatics infrastructure, part of @ELIXIREurope, uniting Czech leading life science organisations.
ELIXIR Czech Republic
 @ELIXIRCZ
Feb 24, 2022

Registration to the #RepeatExplorer Workshop is open! This year we will have in-person event again (May 24-26). More info and registration: repeatexplorer.org/?page_id=14 @BiologyCentre

ELIXIRCZ's tweet image. Registration to the #RepeatExplorer Workshop is open! This year we will have in-person event again (May 24-26). More info and registration: repeatexplorer.org/?page_id=14 @BiologyCentre
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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
Jan 28, 2020

9th #RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis will take place on May 26-28, 2020. Registration is open now. repeatexplorer.org/?page_id=14

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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
Jan 10, 2020

If you are interested in the command-line version of RepeatExplorer, all dependencies can be now easily installed using conda. bitbucket.org/petrnovak/repe… #repeatexplorer #dependencyhell #conda

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caco3cz's profile picture. theoretical physical chemist and chem- and bioinformatician, Chemical data lab at @fchupol ORCID:0000-0001-9472-2589 #boardgamegeek (tweets my own) @ELIXIRCZ
Karel Krápník Berka
 @caco3cz
May 10, 2021

Petr Novák from @BiologyCentre and @ELIXIRCZ will speak about Galaxy Resources for Tool Developers based on his experiences with #RepeatExplorer

galaxyproject's profile picture. Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @galaxyproject@mstdn.science
Galaxy Project
 @galaxyproject
May 10, 2021

Webinar this Wednesday, May 12: Galaxy Resources for Tool Developers galaxyproject.org/events/2021-05… @DBlankenberg @abretau Petr Novák #UseGalaxy Get your tools used.

galaxyproject's tweet image. Webinar this Wednesday, May 12: Galaxy Resources for Tool Developers galaxyproject.org/events/2021-05… @DBlankenberg @abretau Petr Novák #UseGalaxy Get your tools used.
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IBB_botanic's profile picture. Institut Botànic de Barcelona, centre de recerca mixt @CSIC i Consorci @museuciencies. Interpretem la biodiversitat vegetal: investigació i patrimoni
Institut Botànic de Barcelona
 @IBB_botanic
Oct 4, 2018

Nou article publicat a @annbot amb la participació d'investigadors de l'IBB, sobre l'evolució concertada dels gens de l'RNA ribosòmic. El treball s'ha centrat en un grup primitiu de gimnospermes, els gnetòfits #RepeatExplorer @galaxyproject academic.oup.com/aob/advance-ar…

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sphaeromeria's profile picture. Plant genome evolution at @ibb_botanic @CSIC #cytogenomics #repetitiveDNA #ribosomalDNA #Asteraceae #invasivealienspecies #lifemedcliffs #womeninscience
Sònia Garcia
 @sphaeromeria
Oct 3, 2018

More questions to the paradigm of concerted evolution of 5S rRNA genes in #gnetophytes See our new paper in @annbot #RepeatExplorer @galaxyproject academic.oup.com/aob/advance-ar…

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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Feb 4, 2024

Our test cases: Test case 1: Long and confident repeat consensus sequences from #RepeatExplorer clusters --> the produced NODEs are more reliable than the cluster contigs 3/9

toheitka's tweet image. Our test cases: Test case 1: Long and confident repeat consensus sequences from #RepeatExplorer clusters --> the produced NODEs are more reliable than the cluster contigs 3/9
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Oct 31, 2023

Our test cases: Test case 1 (green path in map): Long and highly confident repeat consensus sequences from #RepeatExplorer clusters

toheitka's tweet image. Our test cases: Test case 1 (green path in map): Long and highly confident repeat consensus sequences from #RepeatExplorer clusters
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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
May 25, 2023

Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.

RepeatExplorer's tweet image. Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
RepeatExplorer's tweet image. Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
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biomonika's profile picture. I'm enjoying DNA in my computer. Biology is fascinating. Bioinformatics of sequences. She/her. 🇪🇺
Monika Cechova Mich
 @biomonika
May 26, 2022

Love this graphical description of TRIM transposable elements presented by Sonia Garcia at the 10th #RepeatExplorer workshop in #CeskeBudejovice #Bioinformatics

biomonika's tweet image. Love this graphical description of TRIM transposable elements presented by Sonia Garcia at the 10th #RepeatExplorer workshop in #CeskeBudejovice #Bioinformatics
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ELIXIRCZ's profile picture. National Node of #bioinformatics infrastructure, part of @ELIXIREurope, uniting Czech leading life science organisations.
ELIXIR Czech Republic
 @ELIXIRCZ
Feb 24, 2022

Registration to the #RepeatExplorer Workshop is open! This year we will have in-person event again (May 24-26). More info and registration: repeatexplorer.org/?page_id=14 @BiologyCentre

ELIXIRCZ's tweet image. Registration to the #RepeatExplorer Workshop is open! This year we will have in-person event again (May 24-26). More info and registration: repeatexplorer.org/?page_id=14 @BiologyCentre
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caco3cz's profile picture. theoretical physical chemist and chem- and bioinformatician, Chemical data lab at @fchupol ORCID:0000-0001-9472-2589 #boardgamegeek (tweets my own) @ELIXIRCZ
Karel Krápník Berka
 @caco3cz
May 10, 2021

Petr Novák from @BiologyCentre and @ELIXIRCZ will speak about Galaxy Resources for Tool Developers based on his experiences with #RepeatExplorer

galaxyproject's profile picture. Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @galaxyproject@mstdn.science
Galaxy Project
 @galaxyproject
May 10, 2021

Webinar this Wednesday, May 12: Galaxy Resources for Tool Developers galaxyproject.org/events/2021-05… @DBlankenberg @abretau Petr Novák #UseGalaxy Get your tools used.

galaxyproject's tweet image. Webinar this Wednesday, May 12: Galaxy Resources for Tool Developers galaxyproject.org/events/2021-05… @DBlankenberg @abretau Petr Novák #UseGalaxy Get your tools used.
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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
Jan 28, 2020

9th #RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis will take place on May 26-28, 2020. Registration is open now. repeatexplorer.org/?page_id=14

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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
Jan 10, 2020

If you are interested in the command-line version of RepeatExplorer, all dependencies can be now easily installed using conda. bitbucket.org/petrnovak/repe… #repeatexplorer #dependencyhell #conda

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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Jan 29, 2019

🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20

toheitka's tweet image. 🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20
toheitka's tweet image. 🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20
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IBB_botanic's profile picture. Institut Botànic de Barcelona, centre de recerca mixt @CSIC i Consorci @museuciencies. Interpretem la biodiversitat vegetal: investigació i patrimoni
Institut Botànic de Barcelona
 @IBB_botanic
Oct 4, 2018

Nou article publicat a @annbot amb la participació d'investigadors de l'IBB, sobre l'evolució concertada dels gens de l'RNA ribosòmic. El treball s'ha centrat en un grup primitiu de gimnospermes, els gnetòfits #RepeatExplorer @galaxyproject academic.oup.com/aob/advance-ar…

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sphaeromeria's profile picture. Plant genome evolution at @ibb_botanic @CSIC #cytogenomics #repetitiveDNA #ribosomalDNA #Asteraceae #invasivealienspecies #lifemedcliffs #womeninscience
Sònia Garcia
 @sphaeromeria
Oct 3, 2018

More questions to the paradigm of concerted evolution of 5S rRNA genes in #gnetophytes See our new paper in @annbot #RepeatExplorer @galaxyproject academic.oup.com/aob/advance-ar…

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RepeatExplorer's profile picture. A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
RepeatExplorer
 @RepeatExplorer
May 25, 2023

Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.

RepeatExplorer's tweet image. Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
RepeatExplorer's tweet image. Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
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biomonika's profile picture. I'm enjoying DNA in my computer. Biology is fascinating. Bioinformatics of sequences. She/her. 🇪🇺
Monika Cechova Mich
 @biomonika
May 26, 2022

Love this graphical description of TRIM transposable elements presented by Sonia Garcia at the 10th #RepeatExplorer workshop in #CeskeBudejovice #Bioinformatics

biomonika's tweet image. Love this graphical description of TRIM transposable elements presented by Sonia Garcia at the 10th #RepeatExplorer workshop in #CeskeBudejovice #Bioinformatics
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ELIXIRCZ's profile picture. National Node of #bioinformatics infrastructure, part of @ELIXIREurope, uniting Czech leading life science organisations.
ELIXIR Czech Republic
 @ELIXIRCZ
Feb 24, 2022

Registration to the #RepeatExplorer Workshop is open! This year we will have in-person event again (May 24-26). More info and registration: repeatexplorer.org/?page_id=14 @BiologyCentre

ELIXIRCZ's tweet image. Registration to the #RepeatExplorer Workshop is open! This year we will have in-person event again (May 24-26). More info and registration: repeatexplorer.org/?page_id=14 @BiologyCentre
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Oct 31, 2023

Our test cases: Test case 1 (green path in map): Long and highly confident repeat consensus sequences from #RepeatExplorer clusters

toheitka's tweet image. Our test cases: Test case 1 (green path in map): Long and highly confident repeat consensus sequences from #RepeatExplorer clusters
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Feb 4, 2024

Our test cases: Test case 1: Long and confident repeat consensus sequences from #RepeatExplorer clusters --> the produced NODEs are more reliable than the cluster contigs 3/9

toheitka's tweet image. Our test cases: Test case 1: Long and confident repeat consensus sequences from #RepeatExplorer clusters --> the produced NODEs are more reliable than the cluster contigs 3/9
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toheitka's profile picture. Prof @RWTH Aachen University | Looks closely at #transposons | Loves #plantgenomics, #chromosomes, #polyploidy, #dataviz.
Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋)
 @toheitka
Jan 29, 2019

🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20

toheitka's tweet image. 🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20
toheitka's tweet image. 🌼We began by low coverage sequencing (WGS) of the triploid saffron. Using read clustering with #RepeatExplorer, we identified and characterized the six main satDNAs. 🧬Illumina WGS reads: ncbi.nlm.nih.gov/sra/ERX2828532 7/20
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