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#sratoolkit search results

chengsiyuan1004's profile picture. Cancer biologist, Bioinformatician @LSUHS, dog dad, good husband. Developer of #CTPC #ProAtlas #HuPSA&MoPSA #PCTA
Siyuan Cheng, PhD
 @chengsiyuan1004
Apr 4, 2023

Thanks to #ChatGPT, it wrote me a bash script that runs #pigz automatically when detecting more than 10 *.fastq files in my folder, saving me storage space since #SRAtoolkit's fasterq-dump doesn't support gzip. Made my life much easier!

chengsiyuan1004's tweet image. Thanks to #ChatGPT, it wrote me a bash script that runs #pigz automatically when detecting more than 10 *.fastq files in my folder, saving me storage space since #SRAtoolkit's fasterq-dump doesn't support gzip. Made my life much easier!
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TKochanPhD's profile picture. Principal Investigator at the US-FDA studying Klebsiella pneumoniae virulence | Michigan Alumnus | Star Wars Nerd | Video games | Father & Husband
Travis Kochan, Ph.D. 🧬🦠🔬🧫
 @TKochanPhD
Dec 31, 2021

Yeah. I might be downloading reads from NCBI on two separate MacBooks while I watch football! #SRAToolkit #nerd #CFBPlayoff #ActualLivingScientist

TKochanPhD's tweet image. Yeah. I might be downloading reads from NCBI on two separate MacBooks while I watch football! #SRAToolkit #nerd #CFBPlayoff #ActualLivingScientist
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gregor_rot's profile picture. Bioinformatics of RNA, splicing, APA, drug design, Full Stack WebDev 🏡 https://t.co/0sWEB2LQgg 📚 https://t.co/hUviWjMNNt
Gregor Rot 🌈
 @gregor_rot
Jul 31, 2019

There are some fails in software / concept development around in bioinformatics, however #sratoolkit beats them all

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Life_Summy's profile picture. 人生山あり谷あり・・・
Sammy
 @Life_Summy
Dec 12, 2019

#バイオインフォマティクス #Linux デビューの超初心者です。#SRAtoolkit の #fastq-dump でENA上のあるSRAファイルをfastqに変換して取得しようとしました。エラーも出ず安心したのですが、30分強の後timeout exhaust..とかいうメッセージが出て、コマンドを受け付けません。どうすれば良いですか？

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ChiragParsania's profile picture. Bioinformatics Current : Post-Doc @CentenaryInst Past: Ph.D. from @ChrisKHWong’s lab | https://t.co/sMoi6H4vcK. bioinformatics from @Bioinfo_Pune 🧘‍♂️ 🥗🧑🏻‍💻📷
Chirag Parsania, Ph.D.
 @ChiragParsania
Aug 23, 2023

This is super cool to download #SRA data without messing with #sratoolkit. It provides ftp links to #fastq files. So you can skip .sra to .fastq conversion step. sra-explorer.info #bioinformatics

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Claire__Malley's profile picture. Bioinformatician, statistician @NatEyeInstitute and @ncats_nih_gov
Claire Weber
 @Claire__Malley
Feb 21, 2020

A breakthrough today: how to download .sra format files from dbGaP on AWS. Trying everything while banging head on wall till it works is the most effective way to solve bioinformatics problems. 😉 github.com/ncbi/sra-tools… #SRA #NCBI #sratoolkit #dbGaP #AWS @NCBI

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ChiragParsania's profile picture. Bioinformatics Current : Post-Doc @CentenaryInst Past: Ph.D. from @ChrisKHWong’s lab | https://t.co/sMoi6H4vcK. bioinformatics from @Bioinfo_Pune 🧘‍♂️ 🥗🧑🏻‍💻📷
Chirag Parsania, Ph.D.
 @ChiragParsania
Aug 23, 2023

This is super cool to download #SRA data without messing with #sratoolkit. It provides ftp links to #fastq files. So you can skip .sra to .fastq conversion step. sra-explorer.info #bioinformatics

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chengsiyuan1004's profile picture. Cancer biologist, Bioinformatician @LSUHS, dog dad, good husband. Developer of #CTPC #ProAtlas #HuPSA&MoPSA #PCTA
Siyuan Cheng, PhD
 @chengsiyuan1004
Apr 4, 2023

Thanks to #ChatGPT, it wrote me a bash script that runs #pigz automatically when detecting more than 10 *.fastq files in my folder, saving me storage space since #SRAtoolkit's fasterq-dump doesn't support gzip. Made my life much easier!

chengsiyuan1004's tweet image. Thanks to #ChatGPT, it wrote me a bash script that runs #pigz automatically when detecting more than 10 *.fastq files in my folder, saving me storage space since #SRAtoolkit's fasterq-dump doesn't support gzip. Made my life much easier!
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TKochanPhD's profile picture. Principal Investigator at the US-FDA studying Klebsiella pneumoniae virulence | Michigan Alumnus | Star Wars Nerd | Video games | Father & Husband
Travis Kochan, Ph.D. 🧬🦠🔬🧫
 @TKochanPhD
Dec 31, 2021

Yeah. I might be downloading reads from NCBI on two separate MacBooks while I watch football! #SRAToolkit #nerd #CFBPlayoff #ActualLivingScientist

TKochanPhD's tweet image. Yeah. I might be downloading reads from NCBI on two separate MacBooks while I watch football! #SRAToolkit #nerd #CFBPlayoff #ActualLivingScientist
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Claire__Malley's profile picture. Bioinformatician, statistician @NatEyeInstitute and @ncats_nih_gov
Claire Weber
 @Claire__Malley
Feb 21, 2020

A breakthrough today: how to download .sra format files from dbGaP on AWS. Trying everything while banging head on wall till it works is the most effective way to solve bioinformatics problems. 😉 github.com/ncbi/sra-tools… #SRA #NCBI #sratoolkit #dbGaP #AWS @NCBI

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Life_Summy's profile picture. 人生山あり谷あり・・・
Sammy
 @Life_Summy
Dec 12, 2019

#バイオインフォマティクス #Linux デビューの超初心者です。#SRAtoolkit の #fastq-dump でENA上のあるSRAファイルをfastqに変換して取得しようとしました。エラーも出ず安心したのですが、30分強の後timeout exhaust..とかいうメッセージが出て、コマンドを受け付けません。どうすれば良いですか？

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gregor_rot's profile picture. Bioinformatics of RNA, splicing, APA, drug design, Full Stack WebDev 🏡 https://t.co/0sWEB2LQgg 📚 https://t.co/hUviWjMNNt
Gregor Rot 🌈
 @gregor_rot
Jul 31, 2019

There are some fails in software / concept development around in bioinformatics, however #sratoolkit beats them all

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No results for "#sratoolkit"
chengsiyuan1004's profile picture. Cancer biologist, Bioinformatician @LSUHS, dog dad, good husband. Developer of #CTPC #ProAtlas #HuPSA&MoPSA #PCTA
Siyuan Cheng, PhD
 @chengsiyuan1004
Apr 4, 2023

Thanks to #ChatGPT, it wrote me a bash script that runs #pigz automatically when detecting more than 10 *.fastq files in my folder, saving me storage space since #SRAtoolkit's fasterq-dump doesn't support gzip. Made my life much easier!

chengsiyuan1004's tweet image. Thanks to #ChatGPT, it wrote me a bash script that runs #pigz automatically when detecting more than 10 *.fastq files in my folder, saving me storage space since #SRAtoolkit's fasterq-dump doesn't support gzip. Made my life much easier!
1
0
3
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291
TKochanPhD's profile picture. Principal Investigator at the US-FDA studying Klebsiella pneumoniae virulence | Michigan Alumnus | Star Wars Nerd | Video games | Father & Husband
Travis Kochan, Ph.D. 🧬🦠🔬🧫
 @TKochanPhD
Dec 31, 2021

Yeah. I might be downloading reads from NCBI on two separate MacBooks while I watch football! #SRAToolkit #nerd #CFBPlayoff #ActualLivingScientist

TKochanPhD's tweet image. Yeah. I might be downloading reads from NCBI on two separate MacBooks while I watch football! #SRAToolkit #nerd #CFBPlayoff #ActualLivingScientist
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