#fantom5 search results
Thrilled to see Shimon Sakaguchi awarded the Nobel Prize for his pioneering work on regulatory T cells. Honored that he contributed T-reg cells to FANTOM5, enabling our promoter/enhancer atlases. A truly deserved recognition for a giant of immunology! 🏆👏 #FANTOM5
Congrats to @PerkinsComms Prof @Al__Forrest and the #FANTOM5 team for their #Eureka16 win! @eurekaprizes #perthnews
Scientific Data|ヒトおよびマウス試料の #FANTOM5 CAGEプロファイル go.nature.com/2zNr8ZK 関連インタビュー：go.nature.com/2jcT1US
Scientific Data|VEGFR-3およびVEGFR-2刺激に対するリンパ管内皮細胞の異なる転写反応 go.nature.com/2ANpknw #FANTOM5 Collection go.nature.com/2A3ba1R
Trying to classify #FANTOM5 data based on cell types, something similar as shown in xCell paper. @FANTOM_project @Al__Forrest Do you have such classification for FANTOM5 samples. Would be useful and great help. thanks !
Генетики @riken_en и #FANTOM5 изучают #эмбриогенез. #генетика #эмбриология #млекопитающие scientificrussia.ru/news/obshchee-…
.@ScientificData著者インタビュー「FANTOM5データを誰でも活用できる形に」川路 英哉氏、粕川 雄也氏、坊農 秀雅氏、小野 浩雅氏 go.nature.com/2hZLoQR #FANTOM5
Congratulations to Elsevier's Anders Karlsson and the #FANTOM5 team for the Eureka Prize. #Eureka16 @AKtokyo
Computational biologist/bioinformatician working on #SingleCell profiling of cancer #FANTOM5 @ozsinglecells #humancellatlas Come on down to Australia :)
Recruiting a computational biologist/bioinformatician to work on single cell analysis of tumours. nature.com/naturecareers/…
Extended Data Figure 9 from new #FANTOM5 paper is one of the best hairball ridiculograms I’ve ever seen nature.com/nature/journal…
News: The FANTOM contribution to open science riken.jp/en/pr/topics/2… @carninci @kawajihideya #RIKEN #FANTOM5 #science #scicomm
#FANTOM5 43011 human enhancers in 808 cell/tissue types. Much different from #ENCODE ‘most of genome is regulatory’ nature.com/nature/journal…
FANTOM papers out in Genome Research! In the core paper, we show lncRNAs function by knocking down 300 lncRNAs followed by CAGE and imaging analysis. See also transcript recounting and zoo promoterome works genome.cshlp.org/content/early/… genome.cshlp.org/content/early/… genome.cshlp.org/content/early/…
What do you hope the new map of human gene activity can help us discover about disease? ow.ly/v3VCV #FANTOM5
Scientific Data|ラットとイヌの転写開始活性を探る go.nature.com/2nsIklL #FANTOM5 Collection go.nature.com/2A3ba1R
Press release: #FANTOM5 releases first integrated atlas of microRNA expression in human primary cells riken.jp/en/pr/press/20… @carninci
An integrated expression atlas of miRNAs and their promoters in human and mouse go.nature.com/2fZ7Rj5
Thrilled to see Shimon Sakaguchi awarded the Nobel Prize for his pioneering work on regulatory T cells. Honored that he contributed T-reg cells to FANTOM5, enabling our promoter/enhancer atlases. A truly deserved recognition for a giant of immunology! 🏆👏 #FANTOM5
JS: @FANTOM_project: Mapping cis-regulatory elements based on 5' CAGE. #FANTOM5 #HCA2023GM
This was my main work in @ChikashiTerao lab in @RIKEN_IMS. Many thanks to excellent collaborators @carninci, @chungchau_hon, @skoyamamd, @kawajihideya, @Kazu_Ishigaki, @sese_jun, @nickparrish and others! Also, thanks to amazing #FANTOM5 datasets and GPU supercomputer #ABCI.
Long term job stability (effectively rolling 5 year contracts) allowed us to focus on the science of long term projects like #FANTOM5 The 10 year cutoff was meant to give more stability, but it will now kill a lot of the long term BIG science that takes years.
Does anyone know about #CAGE expression datasets from individuals for which there is also #exome-seq data? Cell type is not relevant. In #FANTOM5 did they do CAGE data from different individuals?
Glad that my machine learning method, MENTR, could find a potential causal variant and transcribed enhancer (from #FANTOM5) for atopic dermatitis. Reporter assays supported this machine learning-driven interpretation. MENTR will be publicly available soon!
Our atopic dermatitis paper is out! We found novel susceptibility loci, potential causal variants, shared genetic architecture between populations and more. jacionline.org/article/S0091-…
This could be a good demonstration of another layer in transcriptome complexity, as well as "pervasive transcription" identified in #FANTOM5 nature.com/articles/natur…
10/#FANTOM5 and GTEx data indicate all three of these genes have enriched expression in brain and nervous system tissue.
@agtaGenomics peeps, this is on today. Noon AEST. #longnoncodingRNAs #genomics #FANTOM5 @carninci
Online seminar today at 12pm AEST! Register to attend eventbrite.com.au/e/seminar-cell…
In essence with this approach we can increase the resolution of projects like the #FANTOM5. Thanks to @chungchau_hon, @JayShin and many more at @RIKEN_IMS. More to see how broadly to apply this; @humancellatlas @humantechnopole
Given their chaotic file formats and utterly rubbish documentation, their choice of name FANTOM totally makes sense! Otherwise, they would have called it fathom or sth meaningful ... #FANTOM5 #FANTOM6 #FunctionalAnnotationOfTheMammalianGenome
Trying to classify #FANTOM5 data based on cell types, something similar as shown in xCell paper. @FANTOM_project @Al__Forrest Do you have such classification for FANTOM5 samples. Would be useful and great help. thanks !
Using the #FANTOM5 data we also show that both coding and #lncRNA genes within the recurrent CNVs (and also known causal genes) are more likely to be expressed in the nervous system.
The idea of the connectome was an excellent one out of the #Fantom5 project. This analysis toolkit and the #connectomeDB2020 are great updates.
I was lucky to be part of #FANTOM4 and #FANTOM5, check out this nice work from #FANTOM6 #CAGE #transcriptomics #lncRNA. Are you part of all 6 @carninci ?
FANTOM papers out in Genome Research! In the core paper, we show lncRNAs function by knocking down 300 lncRNAs followed by CAGE and imaging analysis. See also transcript recounting and zoo promoterome works genome.cshlp.org/content/early/… genome.cshlp.org/content/early/… genome.cshlp.org/content/early/…
The link to the RIKEN press release in English is at: riken.jp/en/news_pubs/r…
FANTOM papers out in Genome Research! In the core paper, we show lncRNAs function by knocking down 300 lncRNAs followed by CAGE and imaging analysis. See also transcript recounting and zoo promoterome works genome.cshlp.org/content/early/… genome.cshlp.org/content/early/… genome.cshlp.org/content/early/…
Scientific Data|ヒトおよびマウス試料の #FANTOM5 CAGEプロファイル go.nature.com/2zNr8ZK 関連インタビュー：go.nature.com/2jcT1US
Scientific Data|VEGFR-3およびVEGFR-2刺激に対するリンパ管内皮細胞の異なる転写反応 go.nature.com/2ANpknw #FANTOM5 Collection go.nature.com/2A3ba1R
Using the #FANTOM5 data we also show that both coding and #lncRNA genes within the recurrent CNVs (and also known causal genes) are more likely to be expressed in the nervous system.
Генетики @riken_en и #FANTOM5 изучают #эмбриогенез. #генетика #эмбриология #млекопитающие scientificrussia.ru/news/obshchee-…
CNEs are positively coregulated with cis HOX genes but negatively with trans cluster. #GTEx #FANTOM5 #TCGA 6/N
Using SNATCNV a new tool for robust testing of CNV-phenotype associations and mining the #FANTOM5 atlas we show that ASD associated CNVs contain an over-representation of nervous systems enriched genes.
Trying to classify #FANTOM5 data based on cell types, something similar as shown in xCell paper. @FANTOM_project @Al__Forrest Do you have such classification for FANTOM5 samples. Would be useful and great help. thanks !
🆕FactBio Collections: curated #biosample data from e.g. #GTEx, #FANTOM5, #CCLE, aligned to #BioOntologies by #Kusp. factbio.com/factbio-collec…
Congratulations to Elsevier's Anders Karlsson and the #FANTOM5 team for the Eureka Prize. #Eureka16 @AKtokyo
We launched 4 collections this year covering: #FANTOM5 w/@nresearchnews; Replication Data w/@OSFramework; Functional Genomics w/@harvardmed & @unimelb; and human population w/@WorldPopProject. Freely access all these (and previous) collections here: nature.com/sdata/collecti…
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