DuckyM2's profile picture. Co-First Author of "A Consensus-Based Checklist for Reporting of Survey Studies (CROSS)" in the Journal of General Internal Medicine.

Nguyen Tran Minh Duc, MD

@DuckyM2

Co-First Author of "A Consensus-Based Checklist for Reporting of Survey Studies (CROSS)" in the Journal of General Internal Medicine.

Nguyen Tran Minh Duc, MD reposted

Popular methods like UMAP & t-SNE are stochastic and distort data structure. Bonsai - a novel method - builds trees to relate high-dimensional objects, accounting for measurement noise. biorxiv.org/content/10.110…

DucheneJohan's tweet image. Popular methods like UMAP & t-SNE are stochastic and distort data structure. 

Bonsai - a novel method - builds trees to relate high-dimensional objects, accounting for measurement noise.

biorxiv.org/content/10.110…

Nguyen Tran Minh Duc, MD reposted

Last year, it took me over a week to learn and visualize protein structures in Blender. Today, with Claude and Blender MCP, it took me less than 30 minutes. Thanks to @AnthropicAI, @Blender, and @buildmodels. Special thanks to @sidahuj for the MCP integration.


Nguyen Tran Minh Duc, MD reposted

How cool is this? Michal Lipinski from @broadinstitute presenting stacked #Illumina spatial slides of the mouse brain with subcellular transcriptome resolution #AGBTGM


Nguyen Tran Minh Duc, MD reposted

🧬 Design PETase with Pinal: 1️⃣ ChatGPT → Describe PETase 2️⃣ Pinal → Input text then run it 3️⃣ AlphaFold3 → Structure prediction 4️⃣ Evolla → Function validation 🚀 Simple yet powerful! Easy! Try:denovo-pinal.com #SyntheticBiology #ProteinDesign #AI4Science


Nguyen Tran Minh Duc, MD reposted

Couldn't see any MND research funded in this round - if so - very disappointing given the world-class MND research being carried out in Australia. Philanthropic organisations should be supplementing government research funding not replacing it!

223 health and medical researchers will share in a $274 million investment to boost innovative research that leads to discoveries that improve the health of all Australians under NHMRC’s 2024 Ideas Grants round. Read more: ow.ly/4OBp50Uskeb

nhmrc's tweet image. 223 health and medical researchers will share in a $274 million investment to boost innovative research that leads to discoveries that improve the health of all Australians under NHMRC’s 2024 Ideas Grants round. Read more: ow.ly/4OBp50Uskeb


Nguyen Tran Minh Duc, MD reposted

If you really love your protein of interest commit to a tattoo @ardemp


Nguyen Tran Minh Duc, MD reposted

Protenix - Yet another reproduction of AF3 github.com/bytedance/Prot…

Protenix: Protein + X | ByteDance - A trainable PyTorch reproduction of AlphaFold 3 GitHub: github.com/bytedance/Prot…



Nguyen Tran Minh Duc, MD reposted

Excited to share our AI+cryo-EM work! 🧬 🔬 Cryo-IEF: Foundation model trained on 65M particles 🤖 CryoWizard: automated structure pipeline 🎯 Making cryo-EM accessible to more labs Preprint: biorxiv.org/content/10.110… Code: github.com/westlake-repl/… #CryoEM #AI #StructuralBiology

duguyuan's tweet image. Excited to share our  AI+cryo-EM work! 🧬
🔬 Cryo-IEF: Foundation model trained on 65M particles
🤖 CryoWizard:  automated structure pipeline
🎯 Making cryo-EM accessible to more labs

Preprint: biorxiv.org/content/10.110…
Code: github.com/westlake-repl/…
#CryoEM #AI #StructuralBiology
duguyuan's tweet image. Excited to share our  AI+cryo-EM work! 🧬
🔬 Cryo-IEF: Foundation model trained on 65M particles
🤖 CryoWizard:  automated structure pipeline
🎯 Making cryo-EM accessible to more labs

Preprint: biorxiv.org/content/10.110…
Code: github.com/westlake-repl/…
#CryoEM #AI #StructuralBiology

Nguyen Tran Minh Duc, MD reposted

This is great! @NIAIDNews have launched a collection of public domain illustrations (currently 550 individual icons) bioart.niaid.nih.gov

simonduerr's tweet image. This is great! @NIAIDNews have launched a collection of public domain illustrations (currently 550 individual icons) bioart.niaid.nih.gov

Nguyen Tran Minh Duc, MD reposted

We often speak about getting new treatments to MND patients, but how does that process actually happen? This infographic, created in collaboration with our friends at @MNDScotland & @mndassoc, helps to explain how drugs are discovered, developed & approved 🔬

MNDoddie5's tweet image. We often speak about getting new treatments to MND patients, but how does that process actually happen? 

This infographic, created in collaboration with our friends at @MNDScotland & @mndassoc, helps to explain how drugs are discovered, developed & approved 🔬

Nguyen Tran Minh Duc, MD reposted

Have you ever wanted to design protein binders with ease? Today we present 𝑩𝒊𝒏𝒅𝑪𝒓𝒂𝒇𝒕, a user-friendly and open-source pipeline that allows to anyone to create protein binders de novo with high experimental success rates. @befcorreia @sokrypton biorxiv.org/content/10.110…


Nguyen Tran Minh Duc, MD reposted

I'm delighted to release the first half of my new open-access online textbook in human population genetics: web.stanford.edu/group/pritchar…

jkpritch's tweet image. I'm delighted to release the first half of my new open-access online textbook in human population genetics:
web.stanford.edu/group/pritchar…

Nguyen Tran Minh Duc, MD reposted

Lots of exciting announcements from this summer. In July, our @NIGMS MIRA was funded! We can't wait to start developing new and intuitive tools for creating, sharing, and archiving molecular animations! Stay tuned here to hear when new tools are released!

janetiwasa's tweet image. Lots of exciting announcements from this summer. In July, our @NIGMS MIRA was funded! We can't wait to start developing new and intuitive tools for creating, sharing, and archiving molecular animations! Stay tuned here to hear when new tools are released!

Nguyen Tran Minh Duc, MD reposted

When the #ALSIceBucketChallenge made waves in 2014, it changed the path of #ALS research. As @VPResearch_ALS says, the impact of the Ice Bucket Challenge will influence the impact of an ALS diagnosis in the future. Join us this summer in continuing the momentum and making a…


Nguyen Tran Minh Duc, MD reposted

Celebrate the 10th anniversary of the #ALSIceBucketChallenge and take the plunge with ALS Canada! 🧊🎉 Ten years ago today, Aug. 6, to Dec. 31, 2014, over 260k Canadians took part in the Ice Bucket Challenge, raising awareness and $17.2 million for #ALS. Take on the challenge…


Nguyen Tran Minh Duc, MD reposted

Crowdsourcing better cancer drugs! At @adaptyvbio, we want to allow anyone to become a protein designer. Test your skills and design a binder to EGFR to make an improved cancer drug. The best designs will be tested experimentally in our automated wet lab and all results will be…

julian_englert's tweet image. Crowdsourcing better cancer drugs!

At @adaptyvbio, we want to allow anyone to become a protein designer.

Test your skills and design a binder to EGFR to make an improved cancer drug. The best designs will be tested experimentally in our automated wet lab and all results will be…

Nguyen Tran Minh Duc, MD reposted

Geneformer, a deep learning model is now available via @NVIDIAHealth’s BioNeMo framework. Geneformer uses the highest-expressed genes in sc-RNA data to generate a representation of each cell that can be used for multiple downstream predictive tasks. Read about it in our dev blog.…


Nguyen Tran Minh Duc, MD reposted

When I was 18, my dad passed away in 2003 after a five-year battle with ALS, also known as Lou Gehrig’s Disease. I was left fatherless, but luckily, Dad instilled a framework of timeless values that taught me how to persevere through hard times and reject the victimhood…

RobertOrdway's tweet image. When I was 18, my dad passed away in 2003 after a five-year battle with ALS, also known as Lou Gehrig’s Disease. I was left fatherless, but luckily, Dad instilled a framework of timeless values that taught me how to persevere through hard times and reject the victimhood…

Nguyen Tran Minh Duc, MD reposted

If you are bootstrapping your startup, but the MRR is not steady, you can apply for these 34 startup grants: 1. opengrants. io 2. fundable. com 3. international .grantwatch.com 4. seedrs. com 5. crowdcube .com 6. crowdfunder .com 7. fundingcircle .com 8. microventures. com 9.…


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