marek mutwil ๐บ๐ฆ
@LabMutwil
Aim: improve gene function predictions of the plant kingdom to produce more climate change-resilient and nutritious crops.
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Our ๐ฐ๐ธ๏ธPlantConnectome is out pubmed.ncbi.nlm.nih.gov/40700523/. The online tool is here: plant.connectome.tools. Explore knowledge graphs generated from 71,000 articles, study protein-protein interactions, regulatory networks, organs, stresses and others! #knowledge #graph #llm #plant
Out lab's homepage has been updated with... News! mutwillab.com
Poor Springer Nature is allowing banners with paid commercials... I guess the already exorbitant open access publication costs are not covering the bills? ๐ตโ๐ซ #AcademicTwitter
PlantConnectome: A knowledge graph database encompassing >71,000 plant articles (Shan Chun Lim , Manoj Itharajula , Mads Harder Mรธller , Rohan Shawn Sunil , Kevin Fo , et al) doi.org/10.1093/plcellโฆ @ASPB #PlantSci
I tend not to post any personal pics here, but do admire my new drysuit!
We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): vandepoelelab.be/Jobs please RT #ERC
It has been a whileโฆ but an updated, faster & more accurate version of OrthoFinder is now out! Scales to thousands of species on conventional compute resources with higher accuracy than ever before and the same data rich fully phylogenetic outputs ๐biorxiv.org/content/10.110โฆ
๐จ New resource for stress-resilient crops! We profiled 3 leafy greens (cai xin, lettuce, spinach) under 24 hydroponic stress conditions using 276 RNA-seq libraries. ๐งฌ Conserved GRNs revealed, new stress database! Published in FIPS shorturl.at/ZepMD
Check out Jan Hรผbbers's In Brief article describing our PlantConnectome (Plant Cell, in press) academic.oup.com/plcell/advanceโฆ
Our Plant Chatbot (plantchatbot.connectome.tools) has been updated with a new interface. To make the results more accurate, we now include a large language model guardrail that highlights relevant results obtained from the knowledge graph. Give it a spin!
Very discouraging. Conclusion: keep doing what you have been doing?
Reading in journal club: Shifting research focus comes with the risk of reduced impact nature.com/articles/d4158โฆ
The May 2025 issue is now fully online, with a cover highlighting the cell wall of ferns, from: "Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls" rdcu.be/enhGp
Good thing I love my job ๐
NEWS: ๐ฉ๐ฐ Today, the retirement age in Denmark has been raised to 70 for people born after the end of 1970.
Suprising results!!! Plants lacking RBP47, the well known Stress Granule marker are more resistant to high temperature stress ๐โ๏ธ biorxiv.org/content/10.110โฆ First manuscript from our group ๐ and collaborators ๐ช
United States ํธ๋ ๋
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