LabShih's profile picture. Twitter of the Lab of Dr. Patrick Shih at UC Berkeley

ShihLab

@LabShih

Twitter of the Lab of Dr. Patrick Shih at UC Berkeley

ShihLab reposted

Active learning enables discovery of transcriptional activators across fungal evolutionary space biorxiv.org/content/10.110… #biorxiv_genomic


ShihLab reposted

Big news from Demirer lab: 4 research papers preprinted! Feedback welcomed: eCIS for plant protein delivery: tinyurl.com/mrx4d878 R2 for targeted insertion: tinyurl.com/5n73za6h Transient expression: tinyurl.com/38p2ud6w Chemotaxis assay: tinyurl.com/3nw9haes 👀⬇️


ShihLab reposted

A truly enabling new approach by Tara Lowensohn, @WillCody_12 and @Sattely_lab to probe plant genetics at scale. Single-gene-per-cell delivery coupled to an effective transcriptional selection system. Libraries in plants. biorxiv.org/content/10.110…

conor_mcclune's tweet image. A truly enabling new approach by Tara Lowensohn, @WillCody_12 and @Sattely_lab to probe plant genetics at scale.

Single-gene-per-cell delivery coupled to an effective transcriptional selection system. 

Libraries in plants.

biorxiv.org/content/10.110…

Check out our new preprint! We examined sources of variability of transgene expression in N. benthamiana agroinfiltration and ways to minimize it. Graduate student Sophia Tang observed FP expression in >1,800 plants over the course of nearly 3 years! biorxiv.org/content/10.110…


ShihLab reposted

Causes and consequences of experimental variation in Nicotiana benthamiana transient expression biorxiv.org/content/10.110… #biorxiv_plants


ShihLab reposted

Today the Shih Lab (@LabShih) presents ENTRAP-seq, a high-throughput assay for functional screening directly in plant cells.

LucasWaldburger's tweet image. Today the Shih Lab (@LabShih) presents ENTRAP-seq, a high-throughput assay for functional screening directly in plant cells.

We're excited to share another work from our lab this week. We present ENTRAP-seq, the first massively parallel reporter assay to characterize protein-coding libraries in plants. Congrats to Simon, Lucas, and all other co-authors. biorxiv.org/content/10.110…


ShihLab reposted

New OA Article: "Quantitative dissection of Agrobacterium T-DNA expression in single plant cells reveals density-dependent synergy and antagonism" rdcu.be/elJ5z News & Views: "Cooperation and antagonism in Agrobacterium-mediated transformation" rdcu.be/elJ5F

NaturePlants's tweet image. New OA Article: "Quantitative dissection of Agrobacterium T-DNA expression in single plant cells reveals density-dependent synergy and antagonism" rdcu.be/elJ5z

News & Views: "Cooperation and antagonism in Agrobacterium-mediated transformation" rdcu.be/elJ5F

ShihLab reposted

In @ScienceAdvances, we report how small chemical modifications in the metabolism of ergosterol are needed for yeast membranes to phase seperate into ordered yet fluid domains science.org/doi/10.1126/sc… (1/n)


ShihLab reposted

I am pleased to announce new research from the Shih Lab (@LabShih) published today in Nature Biotechnology on improving Agrobacterium-mediated transformation via binary vector copy number engineering (doi.org/10.1038/s41587…). 🧵A summary thread below🌿


ShihLab reposted

Binary vector copy number engineering improves Agrobacterium-mediated transformation go.nature.com/3CdewQS

NatureBiotech's tweet image. Binary vector copy number engineering improves Agrobacterium-mediated transformation go.nature.com/3CdewQS

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