MPCM-Evolution
@MPCMevol
We aim at providing a bouquet of overviews on the most recent developments of the phylogenetic comparative methodology.
Potrebbero piacerti
75th anniversary of Systematic Biology with a lot of interesting tools e.g.: torchtree: Flexible Phylogenetic Model Development and Inference Using PyTorch PhyloFusion—Fast and Easy Fusion of Rooted Phylogenetic Trees into Rooted Phylogenetic Networks academic.oup.com/sysbio/issue
What journals do you regularly scan for the latest phylogenetic comparative methods? We are experiencing declines in the number of articles published in the topic. How about you? Probabilistic modelling improves dating besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
Thank you for being with us in 2024. We wish you a Joyful Holiday Season and a productive 2025. Last post in 2024: academic.oup.com/sysbio/article…
After a long break our next post is about Fast mvSLOUCH: Multivariate Ornstein–Uhlenbeck-based models of trait evolution on large phylogenies besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
We wish Happy Holidays and successful 2024 to all. Our last post in 2023 features an interesting application. Check out EvoPhylo. besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
The inference of conflicting evolutionary histories in phylogenomic data. doi.org/10.1038/s41576…
In this recent paper, different measures of Bayesian models are revised and compared, Bayes factors, cross-validation, wAIC Check out academic.oup.com/sysbio/article…
Two interesting papers from Systematic Biology dealing with 1) potential pitfalls of Bayesian analysis of OU model and 2) analysing phylogenetic trees with a tree lattice coordinate system and a graph polynomial. 1) academic.oup.com/sysbio/article… 2) academic.oup.com/sysbio/article…
We would like to thank to all being part of our community in 2022 with this bounch of recently published articles. Follow us in 2023 and share your phylogeny-related contents. besjournals.onlinelibrary.wiley.com/doi/10.1111/20… besjournals.onlinelibrary.wiley.com/doi/10.1111/20… besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
Two new applications for RevBayes Relative Time Constraints Improve Molecular Dating academic.oup.com/sysbio/article… Revticulate: An R framework for interaction with RevBayes besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
Do you feel the beat? DISCO (Decomposition Into Single COpy) helps you in decomposing the multi-copy gene family trees into many single copy trees, academic.oup.com/sysbio/article…
Chronogram or phylogram for ancestral state estimation? This recent article helps to find some answers, at least in the evolution of binary characters besjournals.onlinelibrary.wiley.com/doi/abs/10.111…
3/3. Check out the latest articles related to comparative methods published in Methods in Ecology and Evolution, especially if you were looking for solutions such as: visualising phylogenetic autocorrelation: besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
2/3. Check out the latest articles related to comparative methods published in Methods in Ecology and Evolution, especially if you were looking for solutions such as: the importance of modelling the phylogeny: besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
1/3. Check out the latest articles related to comparative methods published in Methods in Ecology and Evolution, especially if you were looking for solutions such as: evaluating and comparing the strength of phylogenetic signal by ESS: besjournals.onlinelibrary.wiley.com/doi/10.1111/20…
Multiple sequence alignments (MSAs) represent the fundamental unit of data inputted to most comparative sequence analyses. However, the potential effects of MSA uncertainty on the relative model selection procedure itself have not been explored. bmcecolevol.biomedcentral.com/articles/10.11…
After 10 tweets in this year, we are close to the end of 2021. We wish you Happy Holidays and a Phylogeny-rich New Year! Figure: Jamy et al. Global patterns and rates of habitat transitions across the eukaryotic tree of life, Nature Ecol. Evol. preprint
A bunch of new articles from Systematic Biology 4/4 The Implications of Interrelated Assumptions on Estimates of Divergence Times and Rates of Diversification academic.oup.com/sysbio/article…
A bunch of new articles from Systematic Biology 4/3 OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life academic.oup.com/sysbio/article…
A bunch of new articles from Systematic Biology 4/2 Evolutionary Sample Size and Consilience in Phylogenetic Comparative Analysis academic.oup.com/sysbio/article…
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