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In @Nature: Using AI and other cutting-edge techniques, the Klinge lab has captured the first near-continuous "molecular movie" of ribosome formation—revealing, frame by frame, how cells build the protein factories that make life possible. More here: rockefeller.edu/news/38513-maj…
Amazing talk as always!
RESULTS!!! Okay so got 12k reads (bug seems very hard to crack) but the kind folks at @plasmidsaurus.bsky.social offered to rerun. In the meantime, I'm getting some very strong blast hits for a recently discovered species, Edaphobacter flagellatus. FASTQ: drive.google.com/drive/folders/…
In the spirit of #BlueSoup and my friend Elinne, I am sequencing the Triton X-100 contaminant. Stay tuned! Big thanks to @johnowhitaker for bankrolling the plasmidsaurus run. All data will be made public and strain sharable. Yay, community science!
Hybrids reveal accessible chromatin trans genetic associations biorxiv.org/content/10.110… #biorxiv_genetic
New OA Article: "A single-cell rice atlas integrates multi-species data to reveal cis-regulatory evolution" rdcu.be/eHce3 Chromatin accessibility in rice & related grasses: how regulatory DNA elements evolve across cell types & species; identifying potential silencers.
TrimNN paper is out at Nature Communications today. We propose the idea of Cellular Community Motifs in spatial omics and use a graph neural network approach to explore cell organization rules, deciphering the relations between structure and functions nature.com/articles/s4146…
Non-catalytic and catalytic TREHALOSE-6-PHOSPHATE SYNTHASES interact with RAMOSA3 to control maize development. biorxiv.org/content/10.110… #biorxiv_plants
An in planta single-cell screen to accelerate functional genetics biorxiv.org/content/10.110… #biorxiv_plants
👏👍🏼 to auxotrophic Agrobacterium. 5th week of culture and no Agro overgrowth. Less antibiotics needed in selection media 🧫. Great for #undergrad labs. Will transform my plant plasmids 🧬 into these strains🦠🧪. Petunia leaf explants 🌱 expressing the RUBY 🔴 gene. #ECSU
Today is my first day at @genentech in Dr. Aviv Regev's Lab. Yes, yours truly, a (plant) geneticist. In a phenomenal group pioneering lab-in-the-loop methods to accelerate drug discovery.
12 years ago, I typed my first "Hello world!". It is not easy to learn bioinformatics from scratch. But it is possible if you put in effort and have a clear pathway.
Autobioluminescence with a single, easy-to-use transcript; designed with the help of our hero, iggypop. pnas.org/doi/10.1073/pn…
🚨 New preprint alert! 🚨 We used single-cell RNA-seq + GRN analysis to uncover novel morphogenic genes that boost #maize transformation frequency 🌽 biorxiv.org/content/10.110… Thanks to @plaza_genomics and all other co-authors! #PlantScience #scRNAseq
📢We are #hiring! 📢Please RT! @mpipz_cologne has a group leader position available in the broad area of Plant Development and Diversity. Apply now! 👉bit.ly/4nkUvLa #plantscience
🚨 Science Communication #OpportunityAlert: The McClintock Letters! Federal funding for scientific research is under unprecedented threat. But how the public responds to this threat depends on the stories they hear, and who they hear them from. Direct communication is how we…
Dear maize geneticists, we are compiling missense mutations linked to visible phenotypes in maize. If you know of studies with such data, pls let us know through Twitter or email @liu3zhen@ksu.edu. Thank you! @MaizeGDB
John Fowler’s guest column in the Clayton Tribune- his hometown newspaper- to provide ideas that folks could connect with, relating how federal investment in scientific research provides benefits to all Americans, including those from a small town in northeast GA. @jefowlerjr
Our latest paper is out in its final form in @ThePlantCell We show that in plants the same DNA sequence can act as an insulator or silencer depending on the surrounding regulatory context. Read the full paper at: doi.org/10.1093/plcell…
Childcare shouldn’t be a barrier to presenting your research. The ASPB Plant Biology Conference Participation Fund offers childcare subsidies, travel grants & more to help scientists attend #PlantBio2025. 💚 Give back today: bit.ly/4kQXFUP #STEMEquity #SupportScience
New data from the Bob Schmitz lab (Marand 2025) on cell type-specific cis-regulation in maize! This study, in @ScienceMagazine, reveals how DNA changes impact expression and maize traits. Explore the 176 tracks on our browser (Epigenetics and DNA Binding) science.org/doi/10.1126/sc…
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