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Quackscience's profile picture. Senior Data Scientist @sangerinstitute | Antimicrobial resistance evolution | Researcher and coffee drinker

Andrew Balmer

@Quackscience

Senior Data Scientist @sangerinstitute | Antimicrobial resistance evolution | Researcher and coffee drinker

1KPosts 362Followers 2KFollowing
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Andrew Balmer
 @Quackscience
Oct 7

Most AMR data is still collapsed to “resistant vs susceptible.” But resistance often shows gradual shifts before cut-offs. AMR Cartography maps full profiles in 2D — revealing co-resistance, sub-breakpoint changes & lineage patterns. 🔗 biorxiv.org/content/10.110…

Quackscience's tweet image. Most AMR data is still collapsed to “resistant vs susceptible.” But resistance often shows gradual shifts before cut-offs. AMR Cartography maps full profiles in 2D — revealing co-resistance, sub-breakpoint changes & lineage patterns. 🔗 biorxiv.org/content/10.110…
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Quackscience's profile picture.
Andrew Balmer
 @Quackscience
Oct 2

🚨 New paper in eLife! We analysed >100k malaria parasite samples to track the rise of artemisinin resistance. Resistance is now emerging in Africa, echoing SE Asia 10–15 yrs ago. Genomic surveillance is key to staying one step ahead! elifesciences.org/articles/10554…

Quackscience's tweet image. 🚨 New paper in eLife! We analysed >100k malaria parasite samples to track the rise of artemisinin resistance. Resistance is now emerging in Africa, echoing SE Asia 10–15 yrs ago. Genomic surveillance is key to staying one step ahead! elifesciences.org/articles/10554…
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GlobalPneumoSeq
 @pneumowatch
Sep 22

[New pre-print🚨] When a single genotype (pbp) confer resistance to multiple antibiotics (penicillin and cephalosporins), how do we make sense of genetic changes and their impact on AMR? A new concept - AMR cartography is invented by @Quackscience biorxiv.org/content/10.110…

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Quackscience's profile picture.
Andrew Balmer
 @Quackscience
Sep 18

We’ve just posted AMR Cartography on bioRxiv: a way to study multivariate drug resistance and connect it to genotypes. Would love feedback from people working with surveillance MIC data! @AntibioticResis @crypticproject biorxiv.org/content/10.110…

Quackscience's tweet image. We’ve just posted AMR Cartography on bioRxiv: a way to study multivariate drug resistance and connect it to genotypes. Would love feedback from people working with surveillance MIC data! @AntibioticResis @crypticproject biorxiv.org/content/10.110…
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Quackscience's profile picture.
Andrew Balmer
 @Quackscience
Sep 18

Just posted our new preprint: Antimicrobial Resistance Cartography – A generalisable framework for studying multivariate drug resistance @CamInfectDis @CambridgeDDU biorxiv.org/content/10.110…

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Quackscience's profile picture.
Andrew Balmer
 @Quackscience
Sep 17

AMR Cartography lets us visualise how different pneumococcal lineages have distinct multivariate resistance phenotypes. @pneumowatch

Quackscience's tweet image. AMR Cartography lets us visualise how different pneumococcal lineages have distinct multivariate resistance phenotypes. @pneumowatch
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Quackscience's profile picture.
Andrew Balmer
 @Quackscience
Sep 17

New preprint: Antimicrobial Resistance Cartography — a simple way to map multivariate drug-resistance phenotypes, using data from @CDCgov. biorxiv.org/content/10.110…

Quackscience's tweet image. New preprint: Antimicrobial Resistance Cartography — a simple way to map multivariate drug-resistance phenotypes, using data from @CDCgov. biorxiv.org/content/10.110…
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bioRxiv Genomics
 @biorxiv_genomic
Sep 17

Antimicrobial Resistance Cartography: A Generalisable Framework for Studying Multivariate Drug Resistance biorxiv.org/content/10.110… #biorxiv_genomic

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Andrew Balmer reposted
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Lucy Weinert
 @Lucy_Weinert
Sep 17

Introducing AMR cartography - brilliant work by @Quackscience

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bioRxiv Genomics
 @biorxiv_genomic
Sep 17

Antimicrobial Resistance Cartography: A Generalisable Framework for Studying Multivariate Drug Resistance biorxiv.org/content/10.110… #biorxiv_genomic

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MalariaGEN
 @malariagenomics
Jul 1

Announcing the latest version of MalariaGEN’s world-leading malaria parasite data resource: Pf8! 📢 In this release, you’ll find: 🦠 33,325 parasite whole genomes 🌍 Samples from 122 different locations 🗓️ 56 years of data Read more: malariagen.net/article/pf8-re…

malariagen.net

Pf8 released: A major update for the world’s largest malaria parasite genomic data resource

Containing 33,325 whole genomes of Plasmodium falciparum parasites from blood samples collected in 122 different locations across 56 years, Pf8 provides unprecedented opportunities to understand and...

Source: malariagen.net
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Andrew Balmer reposted
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Estée Torok
 @EsteeTorok
Jun 30

Great to see Pf8: an open dataset of Plasmodium falciparum genome variation in 33,325 worldwide samples published today! Congratulations to the @malariagenomics team and all collaborators! wellcomeopenresearch.org/articles/10-325

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MalariaGEN
 @malariagenomics
Jul 2

Our next Journal Club will be all about the new Pf8 data release! Join Dr Nina White, Senior Data Scientist at the Genomic Surveillance Unit (@sangerinstitute) to learn to make the most of this unique malaria parasite data resource. 📅July 22, 1:30pm sanger.zoom.us/webinar/regist…

malariagenomics's tweet image. Our next Journal Club will be all about the new Pf8 data release! Join Dr Nina White, Senior Data Scientist at the Genomic Surveillance Unit (@sangerinstitute) to learn to make the most of this unique malaria parasite data resource. 📅July 22, 1:30pm sanger.zoom.us/webinar/regist…
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ASTMH
 @ASTMH
Oct 21, 2024

Egypt declared malaria-free after 100-year effort, BBC reports. bbc.com/news/articles/…

ASTMH's tweet card. The World Health Organization says the disease "that plagued pharaohs" now belongs to Egypt's history.
Egypt declared malaria-free by World Health Organization
Source: bbc.com
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veupathdb's profile picture. Take the survey: https://t.co/XHzE4mCA6S

VEuPathDB

@veupathdb
JHMRImalaria's profile picture. Leading Science for a Malaria-Free World. At the Bloomberg School of Public Health.

Johns Hopkins Malaria Research Institute

@JHMRImalaria
LSHTM_malaria's profile picture. Founded in 1998, we’re a global network of over 300 researchers, postgraduate students and support staff working together in 40 countries around the world.

LSHTM_malaria

@LSHTM_malaria
JaviF_86's profile picture. 🧬🦠 AMR/Microbial Genomics/Bioinformatics. Tracking AMR bacteria from a One-Health perspective. Passionate ➡️ phylogenomics, plasmids and phages. 🇦🇷 in 🇨🇭

Javier E. Fernandez @javif86.bsky.social

@JaviF_86
MESAmalaria's profile picture. Sharing knowledge and catalyzing research towards a malaria-free world with tools like #MESATrack. Newsletter: https://t.co/fZZ15cQwme

MESA - the malaria knowledge hub

@MESAmalaria
MedsforMalaria's profile picture. A leading global health partnership working to reduce the burden of malaria. We discover, develop and deliver new antimalarial medicines.

Medicines for Malaria Venture (MMV)

@MedsforMalaria
ICE_Malaria's profile picture. Imperial College Network of Excellence in Malaria. Insight, Innovation and Impact. https://t.co/StSLGWHAz4

Imperial College Malaria Network

@ICE_Malaria
GaloGoig's profile picture. Biologist. Bioinformatician. Postdoctoral fellow at @sgagneux1 group (@SwissTPH). Sin música la vida sería un error.

Galo Adrián Goig

@GaloGoig
gmknght's profile picture. Mathematical modeller of AMR. Co-Director @LSHTM_AMR, @cmmid_lshtm and Mum. She/her. Things are only overwhelming until you start doing them. #resistabr

Gwen Knight

@gmknght
XavierDidelot's profile picture. Professor of Statistical Epidemiology and Genomics at @warwickuni

Xavier Didelot

@XavierDidelot
freyaallen__'s profile picture. @MIBTP1 PhD student | AMR and enterococci | @IMIBirmingham | she/her

Freya Allen

@freyaallen__
TalIfargan's profile picture. Data Scientist

Tal Ifargan

@TalIfargan
EMBLEBIjobs's profile picture. At @emblebi we empower researchers and tech visionaries to realise the potential of big data in biology. Follow us for updates on new openings.

EMBL-EBI Jobs

@EMBLEBIjobs
SatheesNair's profile picture. Senior Research Scientist at UKHSA with interest in Salmonella Genomics and AMR. Love travelling, exploring new places,football (COYS),photography and the arts.

Satheesh Nair

@SatheesNair

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