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@SoedingL

Example: The number of full-length ssRNA phage genomes assembled from 82 metatranscriptomic samples from activated sludge and freshwater (Callanan, J. et al. Science Adv, 2020). PenguiN assembles ~3x more genomes (at 99% seqid filtering) than the next best assembler.

SoedingL's tweet image. Example: The number of full-length ssRNA phage genomes assembled from 82 metatranscriptomic samples from activated sludge and freshwater (Callanan, J. et al. Science Adv, 2020). PenguiN assembles ~3x more genomes (at 99% seqid filtering) than the next best assembler.

PenguiN, our viral metagenomics assembler, just got accepted at BMC Microbiome! In contrast to the standard de Bruijn graphs assemblers, it uses all-vs-all alignment in linear time to merge reads. This allows it to often resolve severalfold more strains than dBG assemblers.

SoedingL's tweet image. PenguiN, our viral metagenomics assembler, just got accepted at BMC Microbiome! 
In contrast to the standard de Bruijn graphs assemblers, it uses all-vs-all alignment in linear time to merge reads. This allows it to often resolve severalfold more strains than dBG assemblers.

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