graph_tool's profile picture. graph-tool is an efficient Python module for manipulation and statistical analysis of graphs, implemented in C++.

Also on 🐘 @graph_tool@social.skewed.de

graph-tool

@graph_tool

graph-tool is an efficient Python module for manipulation and statistical analysis of graphs, implemented in C++. Also on 🐘 @[email protected]

Good news for Arch GNU/Linux users! Graph-tool is now available in the main repository! To install it, just do: pacman -S python-graph-tool The days of compiling graph-tool from AUR are over! Rejoice! 🎉

graph_tool's tweet image. Good news for Arch GNU/Linux users! Graph-tool is now available in the main repository! To install it, just do:

pacman -S python-graph-tool 

The days of compiling graph-tool from AUR are over!

Rejoice! 🎉

graph-tool reposted

Hello world! We're a research group led by @tiagopeixoto at the newly founded IT:U, Linz, Austria. We focus on inverse problems in network science and complex systems. Follow this account to get scientific updates! skewed.de/tiago


graph-tool reposted

Did you know that you install @graph_tool via @condaproject, it will install binaries that are optimized for your specific CPU micro-architecture, including SIMD vectorization, in addition to having OpenMP enabled? It's awesome! Try it out today!


graph-tool reposted

Good news everyone! A new version of graph-tool is just out! @graph_tool graph-tool.skewed.de @graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N

tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graph_tool

graph-tool.skewed.de

@graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N
tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graph_tool

graph-tool.skewed.de

@graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N
tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graph_tool

graph-tool.skewed.de

@graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N

graph-tool reposted

Applying Bayesian generative stochastic block modelling to the molecular data of individual patient lesions, we reveal a hierarchical network structure of tumour genetics. Powered by @tiagopeixoto's @graph_tool: check it out for your research. 3/6 🧵

JKRuffles's tweet image. Applying Bayesian generative stochastic block modelling to the molecular data of individual patient lesions, we reveal a hierarchical network structure of tumour genetics.

Powered by @tiagopeixoto's @graph_tool: check it out for your research.

3/6 🧵

graph-tool reposted

This could open a can of worms but... should libraries that offer modularity maximisation methods issue a health warning when the relevant functions are imported? Or maybe just a note in the docs would do the same without bringing scientific debate to the command line



graph-tool reposted

@graph_tool's documentation has just gotten a facelift! Besides an overall re-organization, now there's a new and improved quick start guide. Check it out and tell your friends! graph-tool.skewed.de/static/doc/ind…


graph-tool reposted

Did you know that you can easily use @graph_tool with @SingularityApp? Singularity/Apptainer lets you run containers in HPC clusters *as a regular user*. This means you do not have to ask your sysadmin to install software for you! Easy instructions: git.skewed.de/count0/graph-t…


graph-tool reposted

It's often ~200x faster, does better visualization (IMO), and contains many different algorithms, including inferential community detection. graph-tool.skewed.de/performance graph-tool.skewed.de/static/doc/dem…


graph-tool reposted

Good news everyone! A new version of graph-tool is just out! @graphtool graph-tool.skewed.de Single line installation: Anaconda ⤵️ conda create --name gt -c conda-forge graph-tool Homebrew ⤵️ brew install graph-tool Debian/Ubuntu⤵️ apt-get install python3-graph-tool 1/2

tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graphtool
 
graph-tool.skewed.de

Single line installation:

Anaconda ⤵️
conda create --name gt -c conda-forge graph-tool

Homebrew ⤵️
brew install graph-tool

Debian/Ubuntu⤵️
apt-get install python3-graph-tool

1/2
tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graphtool
 
graph-tool.skewed.de

Single line installation:

Anaconda ⤵️
conda create --name gt -c conda-forge graph-tool

Homebrew ⤵️
brew install graph-tool

Debian/Ubuntu⤵️
apt-get install python3-graph-tool

1/2
tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graphtool
 
graph-tool.skewed.de

Single line installation:

Anaconda ⤵️
conda create --name gt -c conda-forge graph-tool

Homebrew ⤵️
brew install graph-tool

Debian/Ubuntu⤵️
apt-get install python3-graph-tool

1/2

graph-tool reposted

I've moved the @graphtool mailing list to a discourse forum at forum.skewed.de/c/graph-tool The interface is a bit more friendly to many, but it is still possible to interact with it via email, much like a mailing list. The whole archive has been mirrored there as well.


graph-tool reposted

Do you want to study the rich US faculty hiring dataset just published with the paper below by @hneutr, @_szhang, @aaronclauset and @DanLarremore ? It's now also on @netzschleuder on several formats, and can be easily loaded into @graphtool! See: networks.skewed.de/net/faculty_hi…

tiagopeixoto's tweet image. Do you want to study the rich US faculty hiring dataset just published with the paper below by @hneutr, @_szhang, @aaronclauset and @DanLarremore ? 

It's now also on @netzschleuder on several formats, and can be easily loaded into @graphtool!

See: networks.skewed.de/net/faculty_hi…

1/ New paper! nature.com/articles/s4158… with @_szhang @aaronclauset @DanLarremore. 🎓 We analyzed all 295K tenure-track faculty at US PhD-granting universities in 10,612 departments over 10 years to quantify hierarchy and dynamics in US faculty hiring and retention. 🦥 A summary:

hneutr's tweet image. 1/ New paper! nature.com/articles/s4158… with @_szhang @aaronclauset @DanLarremore.

🎓 We analyzed all 295K tenure-track faculty at US PhD-granting universities in 10,612 departments over 10 years to quantify hierarchy and dynamics in US faculty hiring and retention.

🦥 A summary:


graph-tool reposted

Good news everyone! A new version of graph-tool is just out! @graphtool graph-tool.skewed.de Single line installation: anaconda ⤵️ conda create --name gt -c conda-forge graph-tool homebrew ⤵️ brew install graph-tool debian/ubuntu⤵️ apt-get install python3-graph-tool

tiagopeixoto's tweet image. Good news everyone! A new version of graph-tool is just out! @graphtool 

graph-tool.skewed.de

Single line installation:

anaconda ⤵️
conda create --name gt -c conda-forge graph-tool

homebrew ⤵️
brew install graph-tool

debian/ubuntu⤵️
apt-get install python3-graph-tool

graph-tool reposted

A new year, a new version of graph-tool is out!! @graphtool graph-tool.skewed.de Single line installation: anaconda ⤵️ conda create --name gt -c conda-forge graph-tool homebrew ⤵️ brew install graph-tool debian/ubuntu⤵️ apt-get install python3-graph-tool

tiagopeixoto's tweet image. A new year, a new version of graph-tool is out!! @graphtool

graph-tool.skewed.de

Single line installation:

anaconda ⤵️
conda create --name gt -c conda-forge graph-tool

homebrew ⤵️
brew install graph-tool

debian/ubuntu⤵️
apt-get install python3-graph-tool

graph-tool reposted

Giant component evolution on random network. Using @graphtool and based on Barabási's Network Science book (2016). #graph #networks #Python

danniel_warrior's tweet image. Giant component evolution on random network. Using @graphtool and based on Barabási's Network Science book (2016).

#graph #networks #Python

graph-tool reposted

The network of this tweet:

ruydg's tweet image. The network of this tweet:

1/ New paper! nature.com/articles/s4158… with @_szhang @aaronclauset @DanLarremore. 🎓 We analyzed all 295K tenure-track faculty at US PhD-granting universities in 10,612 departments over 10 years to quantify hierarchy and dynamics in US faculty hiring and retention. 🦥 A summary:

hneutr's tweet image. 1/ New paper! nature.com/articles/s4158… with @_szhang @aaronclauset @DanLarremore.

🎓 We analyzed all 295K tenure-track faculty at US PhD-granting universities in 10,612 departments over 10 years to quantify hierarchy and dynamics in US faculty hiring and retention.

🦥 A summary:


graph-tool reposted

A new version of graph-tool is out! @graphtool graph-tool.skewed.de It includes a 5x speedup of the SBM inference multilevel algorithm for principled community detection! Let it rip on your very large networks! See the HOWTO here: graph-tool.skewed.de/static/doc/dem… 1/3

tiagopeixoto's tweet image. A new version of graph-tool is out! @graphtool graph-tool.skewed.de

It includes a 5x speedup of the SBM inference multilevel algorithm for principled community detection! Let it rip on your very large networks!

See the HOWTO here: graph-tool.skewed.de/static/doc/dem…

1/3

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