Juan Pablo Romero PhD
@jprr91
Computational Biologist @10xGenomics Fall seven times stand up eight. My tweets are my own
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How can high-resolution spatial transcriptomics reveal the complex immune landscape and cellular interactions within colorectal cancer tumors at unprecedented detail?@NatureGenet @10xGenomics "High-definition spatial transcriptomic profiling of immune cell populations in…
📢 New Feature Alert 🎉 The beta version of Automated Cell Annotation is live in Cloud Analysis! Reduce the burden of manual annotation & visualize cell types instantly to get more accurate #singlecell insights faster. Try it now: bit.ly/3XVOdHe
#VisiumHD @biorxivpreprint is hitting the webinar big screen. Register to hear 10xers discuss how high-def, whole transcriptome spatial profiling revealed immune populations in #colorectal cancer: bit.ly/4c04gYy
Simplify collaborations! Check out the new LoupeR package to import your Seurat objects into Loupe!
Want to analyze Seurat data without code? Use the new @10xGenomics LoupeR package to move your data into the new Loupe 7. It sports a redesigned UI, and includes new features that put publication-ready figures just a few clicks away! #genomics #singlecell
This is how is situ spatial techs should look like 🤤 👍
Image provided by @10xGenomics of a whole mouse pup run using the #Xenium Mouse Tissue Atlassing panel! 🧬👏
United feature to "duel" people for their seat
🤓🤓🤓🤓
We've been working on Seurat v5 for two years and are excited to share it with you soon! In a webinar w/@10xGenomics and @ScienceMagazine on 3/29, I'll introduce new methods to analyze spatial/multimodal datasets that scale to tens of millions of cells: view6.workcast.net/register?cpak=…
Amanda Janesick from @10xGenomics on high resolution mapping of the breast cancer tumor microenvironment using integrated single-cell, spatial and in-situ analysis of FFPE tissue #AGBT23
Scale up with Flex!
@10xGenomics showing “the future of molecular cytometry” with a rapid Flex prep kit (8M cells in 6 minutes), and 137-plex protein tags with each cell’s transcriptome #AGBT23
Join us! Exciting stuff happening right now!
Can't be at AGBT this year? You can still livestream our Silver Sponsor workshop, and explore new single cell, spatial, and in situ advances. Register now: 10xgen.com/3RCrCdR
#SingleCell and #SpatialGeneExpression tools were transformational. Xenium #InSitu technology is revolutionary. Explore the cellular localization of 100s of targets and fully immerse yourself in your tissue. See for yourself in our new preprint: 10xgen.com/3fLk6i5
🎉 Our WAT3R pipeline for combined single-cell RNA and TCR analysis is out in Bioinformatics @OxUniPress! The most important addition since bioRxiv () is the comparison of TCR recovery between technologies. Congrats @MarinaAinciburu! doi.org/10.1093/bioinf…
Rarely have I been as excited about a new technology: biorxiv.org/content/10.110…. We combined T cell receptor (TCR) sequencing with single-cell RNA-seq from the @10xGenomics 3' Gene Expression platform. Including retrospective use, if you have 3' barcoded cDNA in the freezer! 🧬 1/6
BOOM💥Our Human Tonsil Atlas now @biorxivpreprint. 357,000 single cells, 5 modalities (RNA/ATAC/CITE/T/BCR/ST), 121 subpopulations (available Glossary). FAIR data - HCATonsilData and SLOcatoR. In time for @humancellatlas #HCA2022GM in Vienna. Enjoy! biorxiv.org/content/10.110…
A triumph for single cell nuclei sequencing: determination of a specific type of cell underpinning Parkinson's disease nature.com/articles/s4159… nature.com/articles/s4159… @NatureNano
New tutorial about Trajectory Analysis! If you are not a computational scientist, check @10xGenomics analysis guides for step by step workflows 10xgenomics.com/resources/anal…
CAR GIVEAWAY 🥰 you could win a brand new TESLA! ✨ retweet + follow ✨ comment #PokiCar #sweepstakes
My niece was sad because her father (my brother) couldn't get her a prize in a crane game. She asked me for help. I won a Peppa Pig plush. #bestuncle
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