Martin Stražar
@mstrazar07
Computational microbiome, metabolomics, probabilistic models @ Broad Institute Blog etc. http://mstrazar.github.io
คุณอาจชื่นชอบ
Congratulations @TouficMayassi and @li_chenhao for years of resilient work! Finally this is easy to find
Today our International Summer Sessions in #Metabolomics ended successfully. Prof Panita Ngamchuachit from the #Chulalongkorn University drew our best group picture ever! It is always a great pleasure to meet people from all over the world and discuss Metabolomics.
Microbes from the oral cavity sometimes find a new home in the inflamed gut.🔴🔵 Learn about their chemical repertoire in our recent work led by @schirmer_lab and key players @DanielRojas150 @ericmichbrown @emilytemple_ @dr_invernizzi @TheXavierLab tinyurl.com/5c6r4r2z
HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery dlvr.it/SswhW7
Interested in #antigen discovery? The Xavier lab is developing prediction tools like these! Check out the papers linked below: BOTA: nature.com/articles/s4159… hBOTA: cell.com/immunity/fullt… CAPTAn: cell.com/immunity/fullt…
Online @ImmunityCP! @mstrazar07 & colleagues identify HLA-II binding peptides w/monoallelic #immunopeptiomics & develop a #machinelearning tool (CAPTAn) that predicts peptide antigens based on HLA-II affinity and source protein sequence. authors.elsevier.com/c/1hDg43qNrUu3…
Bacteria send messages from mothers to infants during pregnancy, without making the journey themselves. Genes are passed to related species, preparing them to consume milk sugars soon after birth. Study led by Karolina S. Jabbar & @tvatanen @TheXavierLab mstrazar.github.io/immunology/mic…
Exciting times in computational metabolomics! - a molecular formula transformer designed by @samgoldman19 improves metabolite identification, substructure annotation and networking of novel inflammation-associated compounds.
Grateful for awesome co-authors (incl. @mstrazar07 @TheXavierLab) & advising (@cwcoley). This was also enabled by the great ideas & resources in metabolomics esp. SIRIUS (@boeckerlab), GNPS (@Pdorrestein1) ,MAGMa (@vdHooft_CompMet), and NPClassifier (@mingxunwang). 4/5
Bifidobacterium longum blooms in infancy and adapts to change from breastfeeding to solid foods. Precise transitional subspecies characterization and which carbohydrates they favor, by @QiYanAng and @tvatanen mstrazar.github.io/immunology/mic…
Humbled to be in company of world class scientists at Immunogenomics symposium at Cornell. Thank you @PraveenSethup for hosting, an amazing day for T cells et al!
What a privilege to host @soumya_boston @golnaz_v @DrWoappi @mstrazar07 @MikeBrusilovsky @theGarrettLab and Cornell A.D. White Professor-at-large Ellen Rothenberg at the @Cornell Immunogenomics Symposium! Amazing day of inspiring science! @cornellvet @CornellCFI @CornellCVG 1/2
Incredible science today at the @Cornell 2022 Immunogenomics symposium. Great talks by @soumya_boston , @golnaz_v , @DrWoappi @mstrazar07 , @mantri_madhav Ellen Rothenberg and others. Inspired
Spatial transcriptomics is burning hot this summer! How about measuring interactions between host cells and bacteria in your gut? This was a tough question to crack, but Britta,@mstrazar07,@TheXavierLab, Aviv Regev and I now present spatial host-microbiome sequencing (SHM-seq)🧵:
News story on our latest work investigating TB vaccine-induced immunity, associated gut microbes & their effects on circulating metabolites
Check out the Broad news story on our recently published work in @GenomeBiology and @CellReports examining how the #BCG vaccine gives specific protection against #TB as well as non-specific protection against other pathogens. @broadinstitute @mgh_ri (1/2) broadinstitute.org/news/untanglin…
Zaupajmo znanosti, zaupajmo cepljenju! Poziv k upoštevanju ukrepov, ki zmanjšujejo širjenje koronavirusa. @kemijski ki.si/novice/single-…
Urbanizing African populations are becoming more similar to Western Europeans in terms of gut microbiome Rural environment and diet associate with lower inflammatory response to bacterial and fungal pathogens @TheXavierLab, radboudumc, KCRI Tanzania mstrazar.github.io/immunology/mic…
Excited to share our study on interplay between BCG vaccine efficacy and gut microbiome Cheers Vera and collaborators @TheXavierLab and Radboudumc
Out now in Genome Biology! @mstrazar07 led our latest work in collaboration with Vera Mourits, which reveals specific gut microbes and their products that may alter specific and trained immune responses. @broadinstitute (1/5) genomebiology.biomedcentral.com/articles/10.11…
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