Li Shen
@ngsinformatics
Machine Learning, Big Data, Next-generation sequencing and software.
I became the Course Director of Machine Learning for Biomedical Data Science at Icahn School of Medicine at Mount Sinai this year. It's a lot of work but I'm proud of the team who supported me through this journey. It's a fulfilling experience for me, the…lnkd.in/eeCxiz3d
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With self-supervised learning, we greatly improved data labeling efficiency and model performance upon baseline: #deeplearning #mammography #selfsupervisedlearning lnkd.in/e_R98JAr
DeepRegFinder: Deep Learning-Based Regulatory Elements Finder biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
We will sorely miss the SfN annual meeting this fall. In fact, submitting SfN abstracts has become such a "rite of spring" that my lab went ahead and prepared "shadow SfN abstracts" nonetheless, which can be found here: labs.neuroscience.mssm.edu/wp-content/upl…
Today we open source DeepRegFinder - A deep learning based program to identify DNA regulatory elements. It is easy to use, efficient and compares favorably with existing methods. lnkd.in/eKCrNDr
Just finished the 1st virtual FBI retreat on Zoom. Thank you Zoom for developing such a wonderful tool! Perfect video experience.
I was just notified that our paper (lnkd.in/d7Sv5TH) about breast cancer detection using deep learning is a top 100 downloaded articles 2019 on Scientific Reports. Congrats everyone! lnkd.in/dzXUs3U
Proud to be part of this international effort to fight breast cancer with mammography & AI: lnkd.in/dUsuYdK
Renowned Microbiologists Explain the Coronavirus | Inside Mount Sinai inside.mountsinai.org/blog/renowned-…
The Shen lab wants to be the host lab for future SURP (lnkd.in/dmPXJ66) applicants. You'll get free housing in NYC and $5000 stipend for the summer of 2020!
It's official now: "Deep Learning to improve Breast Cancer Detection on Screening Mammography" has been published - rdcu.be/bPOYf #mammography #artificialintellegence
I'm hiring a bioinformatician: epigenomics using NGS analysis + machine learning. See: lnkd.in/dx3ENei
Last year, I hired a Brown CS student who did a very nice machine learning project as summer intern. This year, I hired two Brown CS! It will be a summer of fun ML projects. #machinelearning #brown
Great online collaborative editing tool for scientific papers (just like Google doc). You don't need to know Latex and write like a pro! lnkd.in/dRBjp6Q
Just wrote a Python notebook called "How to overfit your ML model?". Check out here: lnkd.in/d93qgmU lnkd.in/dXFnXuJ
Will present my deep learning breast cancer diagnosis work at NIPS 2017 Workshop on Machine Learning for Health: lnkd.in/eiHa3rp
Our end-to-end trained, all convolutional neural network beats the top-performing team's method from a recent ML com…lnkd.in/e2UEEkK
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