singlecell_il's profile picture. Connecting Israeli researchers using & developing single cell technologies. 
#singlecell #Israel

single cell network Israel (scIL)

@singlecell_il

Connecting Israeli researchers using & developing single cell technologies. #singlecell #Israel

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Living and breathing single-cells 🦠 but sometimes feel a bit single 👩‍💻? Want to know the faces behind the papers? 📃 Looking for people to speak about the recent controversial tweet 🐘🎨? Can’t wait to share your success (and failures) in reproducing results ? (1/4)


Check out this work from our network —uncovering network motifs in single-cell spatial data! 🫟 @zamir_amos @leeat_keren @AssafZaritsky

Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data. doi.org/10.1101/2025.0… 🧵 1/n

AssafZaritsky's tweet image. Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data.

doi.org/10.1101/2025.0…

🧵

1/n


single cell network Israel (scIL) reposted

Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on April 25. Talks will feature recent exciting computational and experimental advances and will be live-streamed at satijalab.org/scgd. Please RT/spread the word!


single cell network Israel (scIL) reposted

🧬GWAS is fundamental in drug discovery, linking disease to genetic variants. However, studying rare and uncommon diseases with GWAS is hard due to the huge sample sizes required. How can we use AI to help GWAS with small cohorts? In a multi-year collaboration @GSK

KexinHuang5's tweet image. 🧬GWAS is fundamental in drug discovery, linking disease to genetic variants. However, studying rare and uncommon diseases with GWAS is hard due to the huge sample sizes required. How can we use AI to help GWAS with small cohorts?

In a multi-year collaboration @GSK…

Congratulations @AssafZaritsky !

How do organelles change over the course of a stem cell’s life? @cohenlaboratory@AssafZaritsky, and @mattersOfLight are using machine learning and cell engineering to study the impact of organelle-organelle interactions on stem cell differentiation. #FrontierScience

AllenInstitute's tweet image. How do organelles change over the course of a stem cell’s life?

@cohenlaboratory, @AssafZaritsky, and @mattersOfLight are using machine learning and cell engineering to study the impact of organelle-organelle interactions on stem cell differentiation. #FrontierScience
AllenInstitute's tweet image. How do organelles change over the course of a stem cell’s life?

@cohenlaboratory, @AssafZaritsky, and @mattersOfLight are using machine learning and cell engineering to study the impact of organelle-organelle interactions on stem cell differentiation. #FrontierScience
AllenInstitute's tweet image. How do organelles change over the course of a stem cell’s life?

@cohenlaboratory, @AssafZaritsky, and @mattersOfLight are using machine learning and cell engineering to study the impact of organelle-organelle interactions on stem cell differentiation. #FrontierScience
AllenInstitute's tweet image. How do organelles change over the course of a stem cell’s life?

@cohenlaboratory, @AssafZaritsky, and @mattersOfLight are using machine learning and cell engineering to study the impact of organelle-organelle interactions on stem cell differentiation. #FrontierScience


single cell network Israel (scIL) reposted

New study by Dr. @Naomi_habib and @GreenGilad from #HebrewU, in collab with researchers from @Columbia and @Harvard, uncovers two distinct cellular paths in brain aging—one leading to Alzheimer’s and the other to healthy aging—paving the way for personalized treatments. For the…


Due to the escalating situation, limiting participation of many in the community, we decided to postpone the in-person event.💔 We will have a zoom on Thursday (26/9) 10-11AM, as an intro to community, w/ talk by @SItzkovitz, and challenges overview by @naomi_habib & @mor_nitzan

singlecell_il's tweet image. Due to the escalating situation, limiting participation of many in the community, we decided to postpone the in-person event.💔
We will have a zoom on Thursday (26/9) 10-11AM, as an intro to community, w/ talk by @SItzkovitz, and challenges overview by @naomi_habib & @mor_nitzan

We are excited to share the agenda for our 1st annual event, 26/9 @ELSCbrain🪅 w/ spotlights 🔦@YOrenLab, Amos Tanay, @yizhaklab, @atownfool & @SItzkovitz. A field overview by @mor_nitzan & @naomi_habib, and sc-ience sessions led by @bitonm, Oren Ram, @YosefLab & @OCohenlab

singlecell_il's tweet image. We are excited to share the agenda for our 1st annual event, 26/9 @ELSCbrain🪅 
w/ spotlights 🔦@YOrenLab, Amos Tanay, @yizhaklab, @atownfool & @SItzkovitz.
A field overview by @mor_nitzan & @naomi_habib,  and sc-ience sessions led by @bitonm, Oren Ram, @YosefLab & @OCohenlab


We are excited to share the agenda for our 1st annual event, 26/9 @ELSCbrain🪅 w/ spotlights 🔦@YOrenLab, Amos Tanay, @yizhaklab, @atownfool & @SItzkovitz. A field overview by @mor_nitzan & @naomi_habib, and sc-ience sessions led by @bitonm, Oren Ram, @YosefLab & @OCohenlab

singlecell_il's tweet image. We are excited to share the agenda for our 1st annual event, 26/9 @ELSCbrain🪅 
w/ spotlights 🔦@YOrenLab, Amos Tanay, @yizhaklab, @atownfool & @SItzkovitz.
A field overview by @mor_nitzan & @naomi_habib,  and sc-ience sessions led by @bitonm, Oren Ram, @YosefLab & @OCohenlab

single cell network Israel (scIL) reposted

Thrilled our work is published in @Nature! Analyzing over 1.6M snRNA-seq from 437 brains we uncovered cellular trajectories diverging aging and Alzheimer's disease defined by distinct cell communities. Huge thanks to @naomi_habib and all our collaborators. nature.com/articles/s4158…


Dear community, we hope you are safe these days🙏 Towards our meeting, don’t miss the chance to share your sc-ience, poster submission deadline is coming up, Aug. 29th⌛️. 👉  forms.gle/biKowkrPhFVPo8… Looking forward to seeing you Sept, 26th, 10AM @ELSCbrain, Givat Ram, JLM.

Join us for the 1st Annual Single Cell Network Israel Meeting, Sep. 26 at @HebrewU focused on getting to know each other better! 💘 The core of the meeting will feature "Let’s talk sc-ience!" parallel sessions. 🗨️ Registration: forms.gle/sRgzQXRXRaxrov…

singlecell_il's tweet image. Join us for the 1st Annual Single Cell Network Israel Meeting, Sep. 26 at @HebrewU focused on getting to know each other better! 💘
The core of the meeting will feature "Let’s talk sc-ience!" parallel sessions. 🗨️
Registration: forms.gle/sRgzQXRXRaxrov…


single cell network Israel (scIL) reposted

Excited about multi-omics in health? We have a fully-funded PhD position on AI for multi-omics analytics as part of HIDDS4Health call 2024. Apply here: hidss4health.de


single cell network Israel (scIL) reposted

Join the Ayoub Lab at the Technion! We are seeking motivated Master's and PhD students. Our lab focuses on unraveling the mysteries of DNA damage repair and developing innovative targeted cancer therapies. To apply please contact: Prof. Nabieh Ayoub: [email protected]


single cell network Israel (scIL) reposted

Researchers in Prof. @SItzkovitz lab at Weizmann and experts from @SHEBA_ Medical Center’s General Surgery Department compiled the first comprehensive gene expression atlas of the human small intestine >> bit.ly/navigate-diges… @Nature

WeizmannScience's tweet image. Researchers in Prof. @SItzkovitz  lab at Weizmann and experts from @SHEBA_ Medical Center’s General Surgery Department compiled the first comprehensive gene expression atlas of the human small intestine >> bit.ly/navigate-diges… @Nature

Join us for the 1st Annual Single Cell Network Israel Meeting, Sep. 26 at @HebrewU focused on getting to know each other better! 💘 The core of the meeting will feature "Let’s talk sc-ience!" parallel sessions. 🗨️ Registration: forms.gle/sRgzQXRXRaxrov…

singlecell_il's tweet image. Join us for the 1st Annual Single Cell Network Israel Meeting, Sep. 26 at @HebrewU focused on getting to know each other better! 💘
The core of the meeting will feature "Let’s talk sc-ience!" parallel sessions. 🗨️
Registration: forms.gle/sRgzQXRXRaxrov…

single cell network Israel (scIL) reposted

In a new paper, we show how deep nets training dynamics can be used to refine our understanding (or annotations) of single-cell/spatial data and reveal facets of multicellular organization & function. Wonderful collaboration w @BarakRaveh, led by @JonathanKarin3 and Reshef Mintz.

1/n New preprint! Annotatability: Interpreting single-cell and spatial omics data using deep networks training dynamics. With Reshef Mintz, @BarakRaveh and @mor_nitzan biorxiv.org/content/10.110…



Come work with us here in Israel

Attention international postdocs: Applications for the Azrieli International Postdoctoral Fellowship are now being accepted and are due by May 9! The Azrieli International Postdoctoral Fellowship supports the best and brightest minds in their postdoctoral research in Israel,…

PostdocIsrael's tweet image. Attention international postdocs: 
 
Applications for the Azrieli International Postdoctoral Fellowship are now being accepted and are due by May 9! 

The Azrieli International Postdoctoral Fellowship supports the best and brightest minds in their postdoctoral research in Israel,…


Great Zman for some good news 🎉

We are very excited to present the development of Zman-seq (“Zman”, Hebrew for “time”), the 1st technology that measures single-cell transcriptomes and physical time in vivo, led by @D_Birschenkaum, @CuriousKX, @FlorianIngelfi1, @AssafWeiner sciencedirect.com/science/articl…. (1/19)

IdoAmitLab's tweet image. We are very excited to present the development of Zman-seq (“Zman”, Hebrew for “time”), the 1st technology that measures single-cell transcriptomes and physical time in vivo, led by @D_Birschenkaum, @CuriousKX, @FlorianIngelfi1, @AssafWeiner
sciencedirect.com/science/articl…. (1/19)


single cell network Israel (scIL) reposted

This week, I was excited to showcase @CompugenLtd 's advancements in #DataScience and #MachineLearning as a featured presentation in the Y-DATA School of Data Science 'Data-Driven Products' lecture series.

rgranit's tweet image. This week, I was excited to showcase @CompugenLtd 's advancements in #DataScience and #MachineLearning  as a featured presentation in the Y-DATA School of Data Science 'Data-Driven Products' lecture series.

We all feel you! Don’t forget the error bars .. #phd #reviewer2

We are starting a new lab tradition: a branded T shirt for the revision team to celebrate this exciting growth process.

IdoAmitLab's tweet image. We are starting a new lab tradition: a branded T shirt for the revision team to celebrate this exciting growth process.
IdoAmitLab's tweet image. We are starting a new lab tradition: a branded T shirt for the revision team to celebrate this exciting growth process.


Interested in the future of single-cell biology? 🔮 Check this inspiring perspective from leading researchers in the field, including @IdoAmitLab and @SItzkovitz. embopress.org/doi/full/10.15…


single cell network Israel (scIL) reposted

It was an amazing meeting: a beautiful venue with great food and cutting-edge science. I learned so much, and already look forward to the next meeting! Thanks @IdoAmitLab @jonykipnis !

We wish to thank everyone who made Neuroimmunology 2023 such a fantastic meeting and wishing you safe travels back home #ReThinkNeuroimmunology

IdoAmitLab's tweet image. We wish to thank everyone who made Neuroimmunology 2023 such a fantastic meeting and wishing you safe travels back home 
#ReThinkNeuroimmunology


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