ssharma_igem's profile picture. Evolutionary Biologist @TempleUniv

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ

@ssharma_igem

Evolutionary Biologist @TempleUniv

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Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

MyESL: A software for evolutionary sparse learning in molecular phylogenetics and genomics academic.oup.com/mbe/advance-arโ€ฆ @MolBioEvol


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Two new postdoc positions in Computational/Statistical Genomics and Statistical Population Genetics, respectively, at the University of Copenhagen: employment.ku.dk/all-vacancies/โ€ฆ employment.ku.dk/all-vacancies/โ€ฆ . Please help us advertise.


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing biorxiv.org/content/10.110โ€ฆ


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Just see how Bangladeshi Police and military are beating Hindus in Bangladesh... Naked display of Hindu genocide by "Nobel Peace Prize winner" Md Yunus and the world is silent. ๐Ÿ˜ก๐Ÿ˜ก

OpIndia.com๋‹˜์œผ๋กœ๋ถ€ํ„ฐ

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

U.S. Embassy Dhaka reiterates calls for calm and peace. We are concerned about reports of attacks on religious minorities and religious sites in Bangladesh. As a friend and partner to the Bangladeshi people, the United States will continue to support Bangladesh's democraticโ€ฆ

์ด ํŠธ์œ—์€ ๋” ์ด์ƒ ์‚ฌ์šฉํ•  ์ˆ˜ ์—†์Šต๋‹ˆ๋‹ค.

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

FYI: I will present at #evol2024 on an approach for constructing supertrees from collections of phylogenetically restricted trees through the integration of the temporal dimension. July 30, 9:30 AM, room 520E. biorxiv.org/content/10.110โ€ฆ

barba_jose_'s tweet image. FYI: I will present at #evol2024 on an approach for constructing supertrees from collections of phylogenetically restricted trees through the integration of the temporal dimension. July 30, 9:30 AM, room 520E. biorxiv.org/content/10.110โ€ฆ

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Excited to share our latest paper on optimizing genetic distance thresholds for inferring HIV-1 transmission networks. Our heuristic scoring approach adapts to diverse epidemics with an aim of improving identification of clusters & aiding public health interventions.

AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS biorxiv.org/cgi/content/shโ€ฆ #biorxiv_bioinfo



Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

The Gout lab at Mississippi State is hiring a PhD student and postdoc to work on NIH funded projects on transcription fidelity and mitochondrial mutation rates. Find Jeff at today's poster session at #SMBE2034 or contactย [email protected]ย sites.google.com/view/goutlab/hโ€ฆ

GenomeBiolEvol's tweet image. The Gout lab at Mississippi State is hiring a PhD student and postdoc to work on NIH funded projects on transcription fidelity and mitochondrial mutation rates. Find Jeff at today's poster session at #SMBE2034 or contactย jgout@biology.msstate.eduย sites.google.com/view/goutlab/hโ€ฆ

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Published today! We found that cancer cells adapting to drug treatments don't simply switch from a sensitive to resistant state; instead there's a โ€˜resistance continuumโ€™ of resistant phenotypes with epigenetically reprogrammed states. ๐Ÿงตโฌ‡๏ธ nature.com/articles/s4158โ€ฆ @Gustavo_SFranca

ItaiYanai's tweet image. Published today! We found that cancer cells adapting to drug treatments don't simply switch from a sensitive to resistant state; instead there's a โ€˜resistance continuumโ€™ of resistant phenotypes with epigenetically reprogrammed states. ๐Ÿงตโฌ‡๏ธ
nature.com/articles/s4158โ€ฆ @Gustavo_SFranca

Looking for an voluntary clinical obsevership for my wife. I did not realize how hard to find one even staying in academia!!!!


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse Learning biorxiv.org/cgi/content/shโ€ฆ #biorxiv_evobio


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Journal of Statistical Research (jsr.isrt.ac.bd) will publish a special issue on "Longitudinal data analysis and related topics." Dr. Kalyan Das, a former professor of IIT Bombay, will be the guest editor for the issue. Call for papers: lnkd.in/gBinAMYz


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Predicting the effects of missense variants is a central problem in human genome interpretation. We are thrilled to share our preprint on using cross-protein transfer (CPT) learning to improve zero-shot prediction of disease variant effects: doi.org/10.1101/2022.1โ€ฆ (1/8)

yun_s_song's tweet image. Predicting the effects of missense variants is a central problem in human genome interpretation. We are thrilled to share our preprint on using cross-protein transfer (CPT) learning to improve zero-shot prediction of disease variant effects:
doi.org/10.1101/2022.1โ€ฆ
(1/8)

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

In this new paper, @ssharma_igem, Sudhir Kumar, and I present a new method for divergence time estimation that combines LBS, ML, and RelTime approaches for jointly inferring evolutionary relationships and div. times, incorporating phylogeny uncertainty. frontiersin.org/articles/10.33โ€ฆ

frontiersin.org

Frontiers | Molecular timetrees using relaxed clocks and uncertain phylogenies

A common practice in molecular systematics is to infer phylogeny and then scale it to time by using a relaxed clock method and calibrations. This sequential ...


Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Obituary: Masatoshi Nei (1931โ€“2023) Evolutionary geneticist whose powerful statistical methods facilitated the molecular revolution of evolutionary biology. nature.com/articles/s4155โ€ฆ


Want to learn more about #GreenComputing!!!! Join the presentation of #Prof.Sudhir kumar in Evolution Meeting 2023. Time: 2.45 PM Room: Donan Ana/120 #Evol2023 #evolution2023 @myigem

ssharma_igem's tweet image. Want to learn more about #GreenComputing!!!! Join the presentation of #Prof.Sudhir kumar in Evolution Meeting 2023. 
Time: 2.45 PM
Room: Donan Ana/120 
#Evol2023
#evolution2023 
@myigem

Please join us to learn more about #GreeComputing using MEGA version 12. Poster #145 #evol2023 #evolution2023

ssharma_igem's tweet image. Please join us to learn more about #GreeComputing using MEGA version 12. Poster #145
#evol2023
#evolution2023

Sudip Sharma ๐Ÿ‡ง๐Ÿ‡ฉ ๋‹˜์ด ์žฌ๊ฒŒ์‹œํ•จ

Dr. Eric Green - Human Genomics Talk, Monday, April 3rd 11:15 am, Tuttleman 105 #ig #news #front


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