Sudip Sharma ๐ง๐ฉ
@ssharma_igem
Evolutionary Biologist @TempleUniv
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MyESL: A software for evolutionary sparse learning in molecular phylogenetics and genomics academic.oup.com/mbe/advance-arโฆ @MolBioEvol
Two new postdoc positions in Computational/Statistical Genomics and Statistical Population Genetics, respectively, at the University of Copenhagen: employment.ku.dk/all-vacancies/โฆ employment.ku.dk/all-vacancies/โฆ . Please help us advertise.
MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing biorxiv.org/content/10.110โฆ
Just see how Bangladeshi Police and military are beating Hindus in Bangladesh... Naked display of Hindu genocide by "Nobel Peace Prize winner" Md Yunus and the world is silent. ๐ก๐ก
U.S. Embassy Dhaka reiterates calls for calm and peace. We are concerned about reports of attacks on religious minorities and religious sites in Bangladesh. As a friend and partner to the Bangladeshi people, the United States will continue to support Bangladesh's democraticโฆ
FYI: I will present at #evol2024 on an approach for constructing supertrees from collections of phylogenetically restricted trees through the integration of the temporal dimension. July 30, 9:30 AM, room 520E. biorxiv.org/content/10.110โฆ
Excited to share our latest paper on optimizing genetic distance thresholds for inferring HIV-1 transmission networks. Our heuristic scoring approach adapts to diverse epidemics with an aim of improving identification of clusters & aiding public health interventions.
AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS biorxiv.org/cgi/content/shโฆ #biorxiv_bioinfo
The Gout lab at Mississippi State is hiring a PhD student and postdoc to work on NIH funded projects on transcription fidelity and mitochondrial mutation rates. Find Jeff at today's poster session at #SMBE2034 or contactย [email protected]ย sites.google.com/view/goutlab/hโฆ
I am very happy to share that my first-author paper from the PhD work is now published in Nature: nature.com/articles/s4158โฆ
nature.com
Single-cell atlas of the human brain vasculature across development, adulthood and disease
Nature - Endothelial cells from vascular-dependent central nervous system (CNS) diseases reveal reactivated fetal pathways, display common hallmarks of disease โ including a partial loss of...
Published today! We found that cancer cells adapting to drug treatments don't simply switch from a sensitive to resistant state; instead there's a โresistance continuumโ of resistant phenotypes with epigenetically reprogrammed states. ๐งตโฌ๏ธ nature.com/articles/s4158โฆ @Gustavo_SFranca
Looking for an voluntary clinical obsevership for my wife. I did not realize how hard to find one even staying in academia!!!!
Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse Learning biorxiv.org/cgi/content/shโฆ #biorxiv_evobio
Journal of Statistical Research (jsr.isrt.ac.bd) will publish a special issue on "Longitudinal data analysis and related topics." Dr. Kalyan Das, a former professor of IIT Bombay, will be the guest editor for the issue. Call for papers: lnkd.in/gBinAMYz
Predicting the effects of missense variants is a central problem in human genome interpretation. We are thrilled to share our preprint on using cross-protein transfer (CPT) learning to improve zero-shot prediction of disease variant effects: doi.org/10.1101/2022.1โฆ (1/8)
In this new paper, @ssharma_igem, Sudhir Kumar, and I present a new method for divergence time estimation that combines LBS, ML, and RelTime approaches for jointly inferring evolutionary relationships and div. times, incorporating phylogeny uncertainty. frontiersin.org/articles/10.33โฆ
frontiersin.org
Frontiers | Molecular timetrees using relaxed clocks and uncertain phylogenies
A common practice in molecular systematics is to infer phylogeny and then scale it to time by using a relaxed clock method and calibrations. This sequential ...
Obituary: Masatoshi Nei (1931โ2023) Evolutionary geneticist whose powerful statistical methods facilitated the molecular revolution of evolutionary biology. nature.com/articles/s4155โฆ
Want to learn more about #GreenComputing!!!! Join the presentation of #Prof.Sudhir kumar in Evolution Meeting 2023. Time: 2.45 PM Room: Donan Ana/120 #Evol2023 #evolution2023 @myigem
Please join us to learn more about #GreeComputing using MEGA version 12. Poster #145 #evol2023 #evolution2023
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