#metatranscriptomics 検索結果
New method alert!🚨We're thrilled to present #Spatial #metaTranscriptomics (SmT) to detect #host-#bacteria-#fungi #interactomes in tissues. Collaboration between @sami_saar in my lab and @orshalevsk, @Haim_Ashkenazy, @DerekSeveri, Vanessa in @PlantEvolution lab.Main findings in🧵
Today @thaisegreja gave an overview of her research on Maize-Xanthomanas patho-biology and #metatranscriptomics to our @UNL_PSI @UNLresearch @UNLPlantPath community!
Interested in #Metagenomics, #metatranscriptomics, and #multiOmics🦠🦠? Do not miss the opportunity to join us in May for the 5th edition of this great course! Still few available places: physalia-courses.org/courses-worksh… #Genomics #Bioinformatics #microbiome
We have the last 2 seats available in the #Metagenomics, #metatranscriptomics, and #multiOmics courses 🦠🦠 If interested, please check it out: physalia-courses.org/courses-worksh… #Genomics #Bioinformatics #microbiome
What's your go-to normalization method for #metatranscriptomics (TPM, RPKM, Deseq2, others)? Bonus points if you have a great way to normalize metaT to paired #metagenomics datasets! Any insights into mapping metaT to itself, paired metaG reference, other ref DB? Please RT!
This is pretty good for the people who are not yet long reads wizards - @lizilla93 #mewe2019 #metagenomics #metatranscriptomics
Learning about intra-species functional diversity and why it matters for human and ecosystem health 🦠🧑🤝🧑🌳 - fascinating & complex! via the @Physacourses #metagenomics / #metatranscriptomics course led by the Huttenhower lab.
Our latest #preprint, "#Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment", on @biorxivpreprint. Thanks for checking it out! Great to work with this outstanding team. biorxiv.org/content/10.110…
More cool stuff from the Sunny Coast 😎 @Dr_ErinPrice Use of #metatranscriptomics to identify #pathogen diversity and their activity in #CF patients @DerekSarovich @usceduau @AUSSOCMIC #2019ASM
Kicking off the 2nd edition of our #Metagenomics, #metatranscriptomics, and #multiomics for microbial community studies in collaboration with @chuttenh lab huttenhower.sph.harvard.edu #microbiome
#metatranscriptomics of willow roots show shifts in plant gene expression but also in fungi and bacteria communities for trees grown in contaminated soils. Our latest #holobiont research with @yergeaue @fredericpitre @MichelPhyto @NJBBrereton @GenomeQuebec microbiomejournal.biomedcentral.com/articles/10.11…
Great lecture by @efranzosa in this day4 of the #MultiOmics #Metagenomics course about #metatranscriptomics and how to profile the functional activity of microbial communities #Metagenomics #MultiOmics @hutlab #Bioinformatics
🌟 #LastestPaper 📖 #Metatranscriptomics for Understanding the #Microbiome in #Food and #Nutrition Science 🧑🏻🔬By Dr. Chunlong Mu, et al. 🔗mdpi.com/2218-1989/15/3…
Do you want to learn #Metagenomics/#Metatranscriptomics/#Bioinformatics/#MultiOmics? Join us in June for this amazing course with @hutlab: 🔗physalia-courses.org/courses-worksh… There are still a few seats available! #Bioinformatics #genomics #sequencing #microbiome #metagenomics
Great talk by @Dr_ErinPrice, who discusses the advantages of using #metatranscriptomics for the analysis of active #polymicrobial infections in the #cysticfibrosis lung! @usceduau @AUSSOCMIC
Very excited for #2021ASM Stream 1 (starting soon!!) and later Stream 3 talks, featuring some of our uber unique uplifting @usceduau #microbiology peeps @Dr_ErinPrice @KasimovVasilli Susy Anstey #metatranscriptomics #respiratorydisease #pathogenomics #chlamydia #birds #horses
Last 5 seats left on the ONLINE @Physacourses "#Metagenomics, #metatranscriptomics, and multi'#omics for microbial community studies" with @hutlab in June. If interested, please see: physalia-courses.org/courses-worksh… #microbiome Please RT
New paper out enabling #metatranscriptomics integration in genome-scale metabolic models of microbial communities @guido_zampieri @campanarostef @LauraTreu @CellRepMethods doi.org/10.1016/j.crme…
We will run online the 3rd edition of the course "#Metagenomics, #metatranscriptomics, and #multiOmics for microbial community studies" with @hutlab @chuttenh in June! If interested, please check it out: physalia-courses.org/courses-worksh…
Alternatives Integrating Omics Approaches for the Advancement of Human Skin Models: A Focus on #Metagenomics, #Metatranscriptomics, and #Metaproteomics 💡📖 Full Text → mdpi.com/3425500 #OmicsApproaches #SkinModels #Proteomics #HumanHealth #Microbiome
Skin #metatranscriptomics could be transformational in a way not seen in gut/oral studies as 1) Defined sampling can provide in vivo relevant insights 2) Microbial mRNA is dominant, but human mRNA is also detected nature.com/articles/s4158…
Learn about #metagenomics, #metabarcoding, #metatranscriptomics, and #genome data analysis Register: shorturl.at/wq6u9
🚨 Chikungunya detection breakthrough! Metatranscriptomic sequencing uncovers low viral-load infections—advancing biosafety and global health. 🔬 Learn more: sciencedirect.com/science/articl… #Biosafety #HealthInnovation #Metatranscriptomics #VirusDetection
Out in ME! A new study led by @RebeccaKFrench uses total #RNAseq and #metatranscriptomics to reveal associations between extraintestinal pathogenic E. coli and exudative cloacitis in the critically endangered #kakapo. @WileyEcolEvol 🔗: buff.ly/3HxZUW3 📷: Lydia Uddstrom
Functional ‘omics #metatranscriptomics, #metaproteomics, and #metabolomics identify functional traits of the microbiome that are linked to host health and disease. gastrojournal.org/article/S0016-…
🌟 #LastestPaper 📖 #Metatranscriptomics for Understanding the #Microbiome in #Food and #Nutrition Science 🧑🏻🔬By Dr. Chunlong Mu, et al. 🔗mdpi.com/2218-1989/15/3…
First preprint in 2025: #Metatranscriptomics sheds light on who is doing what in a #coral Great collaboration led by @kt_microbes @heroenv @LabVerbruggen @deepseacrepture @momedinamunoz @arc_gov_au @MooreFound biorxiv.org/content/10.110…
🧬 Excited to hear from Imadh Abdul Azeez! He used #metagenomics and #metatranscriptomics to assess the impact of zinc supplementation on the gut microbiome of children in Bangladesh. Discover insights from the ZiPT trial and its implications for child #GutHealth #MicroSeq2024
#Friday #PaperforWeekend #metatranscriptomics A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass ncbi.nlm.nih.gov/pmc/articles/P…
#Thusday #Metatranscriptomics #HostDepletion Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes bmcmicrobiol.biomedcentral.com/articles/10.11…
#Wednesday #Metatranscriptomics Metagenomics versus total RNA sequencing: most accurate data-processing tools, microbial identification accuracy and perspectives for ecological assessments academic.oup.com/nar/article/50…
#Tuesday #metatranscriptomics Current concepts, advances, and challenges in deciphering the human microbiota with metatranscriptomics pubmed.ncbi.nlm.nih.gov/37365103/
Interesting seminar and flash talks organised by @NCCTuebingen on applications and workflows of #metagenomics #metatranscriptomics #genomicsenthusiats
#Trichodesmium colonies living in the same water mass experience different microenvironments. Combining single-colony parallel #metagenomics and #metatranscriptomics we show that each colony expresses general pathways alongside ones specific to the microenvironment.
Current concepts, advances, and challenges in deciphering the human #microbiota with #metatranscriptomics sciencedirect.com/science/articl…
Our paper is out in @Chem_Eng_J - a combined approach including #metagenomics,#metatranscriptomics,#machine-learning and #metabolic modelling to decipher the #syntrophies in C2-C4 organic acids-degrading #anaerobic #microbiomes– doi.org/10.1016/j.cej.… @DiBio_UniPD @IBBPAS
New method alert!🚨We're thrilled to present #Spatial #metaTranscriptomics (SmT) to detect #host-#bacteria-#fungi #interactomes in tissues. Collaboration between @sami_saar in my lab and @orshalevsk, @Haim_Ashkenazy, @DerekSeveri, Vanessa in @PlantEvolution lab.Main findings in🧵
Today’s seminar: @FR_LucasAuer on #Forest #soil #metatranscriptomics: a long journey in #bioinformatics
We have just started our #Metagenomics, #metatranscriptomics, and #multiOmics Workshop with Melanie Schirmer, @Kevbonham, Cesar Arze and @chuttenh #ksgut #KSmicrobiome
Interested in #Metagenomics, #metatranscriptomics, and #multiOmics🦠🦠? Do not miss the opportunity to join us in May for the 5th edition of this great course! Still few available places: physalia-courses.org/courses-worksh… #Genomics #Bioinformatics #microbiome
We have the last 2 seats available in the #Metagenomics, #metatranscriptomics, and #multiOmics courses 🦠🦠 If interested, please check it out: physalia-courses.org/courses-worksh… #Genomics #Bioinformatics #microbiome
Registrations are now closed for our course "#Metagenomics, #metatranscriptomics, and multi'omics for microbial community studies"
Our paper: #Metatranscriptomics of #Biogeochemically-relaed Genes in #Amazon River, @PLOSONE dx.doi.org/10.1371/journa…
Kicking off the 2nd edition of our #Metagenomics, #metatranscriptomics, and #multiomics for microbial community studies in collaboration with @chuttenh lab huttenhower.sph.harvard.edu #microbiome
Separating host plant and pathogen ORFs without reference genomes #PlantPathogenomics #FieldPathogenomics #metatranscriptomics
@Marie_a_crane from @usegalaxyp presented her summer project on #metatranscriptomics #asaim workflow in #usegalaxy. Merci @bebatut pour votre assistance !
Today @thaisegreja gave an overview of her research on Maize-Xanthomanas patho-biology and #metatranscriptomics to our @UNL_PSI @UNLresearch @UNLPlantPath community!
Curtis is now presenting their tool AnADAMA2 to create reproducible workflows and execute them efficiently. github.com/biobakery/biob… #omics #metagenomics #metatranscriptomics
Do you want to learn #Metagenomics/#Metatranscriptomics/#Bioinformatics/#MultiOmics? Join us in June for this amazing course with @hutlab: 🔗physalia-courses.org/courses-worksh… There are still a few seats available! #Bioinformatics #genomics #sequencing #microbiome #metagenomics
SAMSA v2.0 will allow in house annotations, run faster.... #goSam! #metatranscriptomics #BiotechRetreat
We used a novel computational 🖥️workflow leveraging #metatranscriptomics #metagenomics and #metabolomics 🧬from the #HMP2 to identify 12 candidate enzymes from 2 protein families that could perform this conversion. Neither had previously been implicated in drug metabolism. (4/9)
Last 5 seats left on the ONLINE @Physacourses "#Metagenomics, #metatranscriptomics, and multi'#omics for microbial community studies" with @hutlab in June. If interested, please see: physalia-courses.org/courses-worksh… #microbiome Please RT
We will run online the 3rd edition of the course "#Metagenomics, #metatranscriptomics, and #multiOmics for microbial community studies" with @hutlab @chuttenh in June! If interested, please check it out: physalia-courses.org/courses-worksh…
Great lecture by @efranzosa in this day4 of the #MultiOmics #Metagenomics course about #metatranscriptomics and how to profile the functional activity of microbial communities #Metagenomics #MultiOmics @hutlab #Bioinformatics
New paper out enabling #metatranscriptomics integration in genome-scale metabolic models of microbial communities @guido_zampieri @campanarostef @LauraTreu @CellRepMethods doi.org/10.1016/j.crme…
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