#sequencedata search results
FUSION: a family-level integration approach for robust differential analysis of small non-coding RNAs. #sncRNA #SequenceData #DataAnalysis #Bioinformatics #Genomics academic.oup.com/bioinformatics…
GENOMICON-Seq enables realistic simulation of amplicon and exome sequencing for low-frequency mutation detection. #DataSimulation #SequenceData #LowFrequencyMutations #Bioinformatics #Genomics @SciReports nature.com/articles/s4159…
Improved Mutation Detection in Duplex Sequencing Data with Sample-Specific Error Profiles. #DuplexBasedVariantCalling #DataCorrection #SequenceData #ShorReads #Bioinformatics @biorxiv_bioinfo biorxiv.org/content/10.110…
A new compression strategy to reduce the size of nanopore sequencing data. #DataCompression @nanopore #SequenceData #Bioinformatics #Genomics @genomeresearch genome.cshlp.org/content/early/…
Haplotype-aware long-read error correction. #LongReads #SequenceData #ErrorCorrection #HaplotypeAware #Genomics #Bioinformatics @biorxiv_genomic biorxiv.org/content/10.110…
SeqCAT: Sequence Conversion and Analysis Toolbox. #SequenceData #CoordinatesConversion #NGS #Bioinformatics @NAR_Open academic.oup.com/nar/advance-ar…
Bigtools: a high-performance BigWig and BigBed library in rust. #BigWig #BigBed #SequenceData #Rust #Bioinformatics academic.oup.com/bioinformatics…
FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets. #SequenceAlignments #Ultralong #SequenceData #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets
AbstractMotivation. In bioinformatics, multiple sequence alignment (MSA) is a crucial task. However, conventional methods often struggle with aligning ultr
Using different platforms and would like to analyze your datasets together? Honeycomb provides a free tutorial using example data from two different platforms. Available here: hubs.ly/Q01_S38P0 #datasets #sequencing #sequencedata
Streamlining remote nanopore data access with slow5curl. @nanopore #SequenceData @GigaScience academic.oup.com/gigascience/ar…
SQANTI-reads: a tool for the quality assessment of long read data in multi-sample lrRNA-seq experiments. #LongReads #RNAseq #SequenceData #QualityAssessment @ConesaLab @biorxivpreprint biorxiv.org/content/10.110…
PQSDC: a parallel lossless compressor for quality scores data via sequences partition and Run-Length prediction mapping. #SequenceData #FASTQfiles #DataCompression #QualityScores #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-len...
AbstractMotivation. The quality scores data (QSD) account for 70% in compressed FastQ files obtained from the short and long reads sequencing technologies.
CleanUpRNAseq: An R/Bioconductor Package for Detecting and Correcting DNA Contamination in RNA-Seq Data. #RNAseq #SequenceData #DNAcontamination #BioTechJournal mdpi.com/2673-6284/13/3…
altAFplotter: a web app for reliable UPD detection in NGS diagnostics. #UniparentalDisomies #SequenceData #Diagnostics @BMCBioinfo bmcbioinformatics.biomedcentral.com/articles/10.11…
LongReadSum: A fast and flexible quality control and signal summarization tool for long-read sequencing data. #LongRead #SequenceData #SequenceQC @biorxivpreprint biorxiv.org/content/10.110…
The genome is publicly available in @NCBI GenBank. We have also deposited the sequence read data in the Sequence Read Archive (SRA) under BioProject PRJNA888783. You may access the #sequencedata for further #research at ncbi.nlm.nih.gov/bioproject/?te… #genomics #dataanalysis #openaccess
Improved Mutation Detection in Duplex Sequencing Data with Sample-Specific Error Profiles. #DuplexBasedVariantCalling #DataCorrection #SequenceData #ShorReads #Bioinformatics @biorxiv_bioinfo biorxiv.org/content/10.110…
GENOMICON-Seq enables realistic simulation of amplicon and exome sequencing for low-frequency mutation detection. #DataSimulation #SequenceData #LowFrequencyMutations #Bioinformatics #Genomics @SciReports nature.com/articles/s4159…
Haplotype-aware long-read error correction. #LongReads #SequenceData #ErrorCorrection #HaplotypeAware #Genomics #Bioinformatics @biorxiv_genomic biorxiv.org/content/10.110…
A new compression strategy to reduce the size of nanopore sequencing data. #DataCompression @nanopore #SequenceData #Bioinformatics #Genomics @genomeresearch genome.cshlp.org/content/early/…
altAFplotter: a web app for reliable UPD detection in NGS diagnostics. #UniparentalDisomies #SequenceData #Diagnostics @BMCBioinfo bmcbioinformatics.biomedcentral.com/articles/10.11…
CleanUpRNAseq: An R/Bioconductor Package for Detecting and Correcting DNA Contamination in RNA-Seq Data. #RNAseq #SequenceData #DNAcontamination #BioTechJournal mdpi.com/2673-6284/13/3…
SQANTI-reads: a tool for the quality assessment of long read data in multi-sample lrRNA-seq experiments. #LongReads #RNAseq #SequenceData #QualityAssessment @ConesaLab @biorxivpreprint biorxiv.org/content/10.110…
LongReadSum: A fast and flexible quality control and signal summarization tool for long-read sequencing data. #LongRead #SequenceData #SequenceQC @biorxivpreprint biorxiv.org/content/10.110…
SeqCAT: Sequence Conversion and Analysis Toolbox. #SequenceData #CoordinatesConversion #NGS #Bioinformatics @NAR_Open academic.oup.com/nar/advance-ar…
Bigtools: a high-performance BigWig and BigBed library in rust. #BigWig #BigBed #SequenceData #Rust #Bioinformatics academic.oup.com/bioinformatics…
PQSDC: a parallel lossless compressor for quality scores data via sequences partition and Run-Length prediction mapping. #SequenceData #FASTQfiles #DataCompression #QualityScores #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-len...
AbstractMotivation. The quality scores data (QSD) account for 70% in compressed FastQ files obtained from the short and long reads sequencing technologies.
Streamlining remote nanopore data access with slow5curl. @nanopore #SequenceData @GigaScience academic.oup.com/gigascience/ar…
FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets. #SequenceAlignments #Ultralong #SequenceData #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets
AbstractMotivation. In bioinformatics, multiple sequence alignment (MSA) is a crucial task. However, conventional methods often struggle with aligning ultr
Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control. #PlasmodiumProfiling #WGS #SequenceData #Bioinformatics @GenomeMedicine genomemedicine.biomedcentral.com/articles/10.11…
WFA-GPU: Gap-affine pairwise read-alignment using GPUs. #SequenceData #LongReads #ReadAlignment #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
WFA-GPU: gap-affine pairwise read-alignment using GPUs
AbstractMotivation. Advances in genomics and sequencing technologies demand faster and more scalable analysis methods that can process longer sequences wit
The COVID-19 Portal is one of the two key components of our wider initiative, the European COVID-19 Data Platform. The Platform will also contain Data Hubs which will organise the flow of #sequencedata from the outbreak and provide #opendata sharing for researchers 3/4
Need expert #training in #evolutionary analysis of #sequencedata in light of the explosive growth of sequence databases? If your #computational skills needs some updating, join us for #CMEvo19 to gain hands-on experience of the latest methods. Closes 14/02:bit.ly/CMEvo19
FUSION: a family-level integration approach for robust differential analysis of small non-coding RNAs. #sncRNA #SequenceData #DataAnalysis #Bioinformatics #Genomics academic.oup.com/bioinformatics…
A new compression strategy to reduce the size of nanopore sequencing data. #DataCompression @nanopore #SequenceData #Bioinformatics #Genomics @genomeresearch genome.cshlp.org/content/early/…
@MafaldaFigDias & @Jonnygfrazer Lab Probabilistic #Modelling of #SequenceData | #MachineLearning | Human #Genetic Disease | #Biodiversity | #ComparativeGenomics | #BayesianStatistics #PhDCRG23
Improved Mutation Detection in Duplex Sequencing Data with Sample-Specific Error Profiles. #DuplexBasedVariantCalling #DataCorrection #SequenceData #ShorReads #Bioinformatics @biorxiv_bioinfo biorxiv.org/content/10.110…
Welcome to our new bioinformatician Charlotte Cravero 🎉🎉🎉 She will work mainly on sequence data assembly of large DNA fragments 🧬🧬🧬 #sequencing #bioinformatician #sequencedata #newrecuitment
GENOMICON-Seq enables realistic simulation of amplicon and exome sequencing for low-frequency mutation detection. #DataSimulation #SequenceData #LowFrequencyMutations #Bioinformatics #Genomics @SciReports nature.com/articles/s4159…
Haplotype-aware long-read error correction. #LongReads #SequenceData #ErrorCorrection #HaplotypeAware #Genomics #Bioinformatics @biorxiv_genomic biorxiv.org/content/10.110…
Training in Bioinformatics for Beginners. April 17-20, 2018. National Institutes of Health,Bethesda,MD,USA events.r20.constantcontact.com/register/event… #Bioinformatics #Beginner #sequencedata
Selene: a PyTorch-based deep learning library for sequence data | Nature Methods nature.com/articles/s4159… #DeepLearning #SequenceData
Training in Bioinformatic Analysis of Next Generation Sequencing Data, May 8-11,2018. National Institutes of Health, Bethesda, MD,USA . events.r20.constantcontact.com/register/event…… #bioinformatics #sequencedata #nextgeneration #cloudcomputing
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