#vcbs2021 نتائج البحث
Time extension, for those in the art of cancer bioinformatics this is the symposium for your, submit an abstract to be considered for an oral presentation or a poster. The aim is to have this in person lockdown permitting @RMITBioinfo @abacbs @MelBioInf @ARDC_AU @AusBiocommons
GM: Some of the 17 copy number signatures have clear etiologies (many stars), others do not. GM then goes on to applications, showing an example of predicting drug sensitivity based on one of the CNA signatures, CX3. #vcbs2021
DB addressing the problem of large numbers of significant genes or gene sets in DE/GSEA analyses with the visualisation tool vissE. Word clouds a feature! #vcbs2021
ND modified her RNA-Seq short-read fusion caller JAFFA to work on long reads. Simulations across a range of sequence identity, for nanopore and pacbio tech, shows great performance, outperforming other methods. #vcbs2021
And this concludes the #vcbs2021 meeting! Thanks for joining everyone, and feel free to continue mingling on slack!
Tea break, #VCBS2021 resumes in half an hour at 16:00. Remember to vote for best talk and poster in the prize-voting slack channel!
Love this analogy from GM! I'm only disappointed that he didn't turn up wearing a fedora and tench coat 😂 #VCBS2021
MW points out that many cancers acquire resistance to PARP1 inhibitors, the most difficult to deal with being mutations in PARP1 itself. MW goes on to study functionality of all mutations in PARP1 using maveDB and molecular dynamics. #vcbs2021
A very important slide, some of the challenges from a consumer rep perspective. @ccs_cares @VicCanBioinf #vcbs2021
@VicCanBioinf #vcbs2021 First talk from internatioinal speaker Claudia Kleinmann on Pediatric Brain Tumours. #singleCell
GM using 5 basic properties of CNA profiles to classify copy number events used to feed into the NMF. This resulted in 17 different signatures, that they then try to interpret and assign etiology. #vcbs2021
GM using copy number profiles from TCGA genomes to perform Negative Matrix Factorisation, finding recurring copy number signatures. #vcbs2021
GM talking about CIN: chromosomal instability, and looking for the cause of the insatbility through signatures, "footprints", in the instability. #vcbs2021
KL makes use of 16S-Seq from different parts of the world, deals with all the contamination and QC, and shows that bacteria diversity varies geographically. Impressive application! #vcbs2021
Abstracts close today for the 2021 Victorian Cancer Bioinformatics Symposium. If you were thinking of presenting at this fantastic meeting, today is the day! #VCBS2021 #CancerResearch #Bioinformatics viccancerbioinfsymposium.org
When to engage with a consumer rep…. NOT two days before grant is due. It is a more important component as grant funders request it. #feelingSeen Not just about grant applications. @VicCanBioinf #vcbs2021
@VicCanBioinf #VCBS2021 Abstract submitted! Still time to submit one this afternoon if you haven't already. 2021 sure to be a terrific meeting like 2019/20 viccancerbioinfsymposium.org
Thanks to all the amazing speakers, researchers, students & consumers who joined us, sponsors who made it possible & all the #VCBS2021 organising committee! Was an honour and a great experience being the co-convener of @VicCanBioinf symposium with @camerongenomics this year!
It’s a wrap, what a wonderful day of science and bioinformatics @VicCanBioinf #vcbs2021 well done @S_Foroutan and @camerongenomics for leading this year also the sponsors again @illumina @WEHI_research @MonashUni @agtaGenomics We should be back next year methinks.
Puxue also won the best oral presentation (ECR) at @VicCanBioinf Great work! #VCBS2021
And this concludes the #vcbs2021 meeting! Thanks for joining everyone, and feel free to continue mingling on slack!
Congratulations to #vcbs2021 awar winners: Best poster: Sam El-Kamand Best student presentation: Adrian Salavaty Best ECR presentation: Puxue Qiao
Great day at Victorian Cancer Bioinformatics Symposium today #vcbs2021. Congratulations especially to @camerongenomics and @S_Foroutan
It’s a wrap, what a wonderful day of science and bioinformatics @VicCanBioinf #vcbs2021 well done @S_Foroutan and @camerongenomics for leading this year also the sponsors again @illumina @WEHI_research @MonashUni @agtaGenomics We should be back next year methinks.
MW points out that many cancers acquire resistance to PARP1 inhibitors, the most difficult to deal with being mutations in PARP1 itself. MW goes on to study functionality of all mutations in PARP1 using maveDB and molecular dynamics. #vcbs2021
.@nadia_davidson's JAFFAL pre-print about calling fusions from long read data biorxiv.org/content/10.110… #vcbs2021
Last speaker is Matthew J Wakefield @genomematt on "Testing all possible mutations in PARP1 to prospectively identify resistance mutations and drug substitutions that will overcome resistance"! #vcbs2021
ND modified her RNA-Seq short-read fusion caller JAFFA to work on long reads. Simulations across a range of sequence identity, for nanopore and pacbio tech, shows great performance, outperforming other methods. #vcbs2021
Next up is @nadia_davidson talking about "JAFFAL: Detecting fusion genes with long read transcriptome sequencing". #vcbs2021
GM: Some of the 17 copy number signatures have clear etiologies (many stars), others do not. GM then goes on to applications, showing an example of predicting drug sensitivity based on one of the CNA signatures, CX3. #vcbs2021
“Any sufficiently advanced technology is indistinguishable from magic” #vcbs2021
GM using 5 basic properties of CNA profiles to classify copy number events used to feed into the NMF. This resulted in 17 different signatures, that they then try to interpret and assign etiology. #vcbs2021
GM using 5 basic properties of CNA profiles to classify copy number events used to feed into the NMF. This resulted in 17 different signatures, that they then try to interpret and assign etiology. #vcbs2021
GM using copy number profiles from TCGA genomes to perform Negative Matrix Factorisation, finding recurring copy number signatures. #vcbs2021
Congratulations to my talented PhD student @mikhail_dias on winning best short video for consumers at #VCBS2021! Fantastic job explaining complex cancer biology in a fun and easy to follow format. @PeterMacRes #CancerBioinformatics
And #vcbs2021 Consumer award for best short video goes to: Mikhail Dias with "Characterizing changes in gene co-espression facilitating the loss of features of multicellularity driving Prostate cancer progression” Congatulations!
Love this analogy from GM! I'm only disappointed that he didn't turn up wearing a fedora and tench coat 😂 #VCBS2021
GM talking about CIN: chromosomal instability, and looking for the cause of the insatbility through signatures, "footprints", in the instability. #vcbs2021
Kicking off the last session of @VicCanBioinf #vcbs2021 is @gjmacintyre talking about a computational project that has led to a spin off company. #entrepreneur
4th and last #vcbs2021 session starts with a keynote from Spain: Geoff Macintyre @gjmacintyre on "A pan-cancer compendium of chromosomal instability".
Time extension, for those in the art of cancer bioinformatics this is the symposium for your, submit an abstract to be considered for an oral presentation or a poster. The aim is to have this in person lockdown permitting @RMITBioinfo @abacbs @MelBioInf @ARDC_AU @AusBiocommons
PQ running simulations and comparing to the commonly used inferCNV. Their model shows improved sensitivity. #vcbs2021
KG sharing resources and advice for how to form collaborations and relationships with consumers representatives. #vcbs2021
MW presenting Graphene, a portable pipeline including an impressive range of analysis tools! #vcbs2021
KB sharing her breast cancer story and why she became a consumer representative. Big part to give back and help. #vcbs2021
And this concludes the #vcbs2021 meeting! Thanks for joining everyone, and feel free to continue mingling on slack!
Tea break, #VCBS2021 resumes in half an hour at 16:00. Remember to vote for best talk and poster in the prize-voting slack channel!
Abstracts close today for the 2021 Victorian Cancer Bioinformatics Symposium. If you were thinking of presenting at this fantastic meeting, today is the day! #VCBS2021 #CancerResearch #Bioinformatics viccancerbioinfsymposium.org
GM: Some of the 17 copy number signatures have clear etiologies (many stars), others do not. GM then goes on to applications, showing an example of predicting drug sensitivity based on one of the CNA signatures, CX3. #vcbs2021
KB asks to include consumer representatives early in projects, not last second before grants. Probably an issue many bioinformaticians can relate to. #vcbs2021
AC simulating the evolution of a cancer, including selection through driver genes and non-genetic resistance state. #vcbs2021
ND modified her RNA-Seq short-read fusion caller JAFFA to work on long reads. Simulations across a range of sequence identity, for nanopore and pacbio tech, shows great performance, outperforming other methods. #vcbs2021
A very important slide, some of the challenges from a consumer rep perspective. @ccs_cares @VicCanBioinf #vcbs2021
@VicCanBioinf #vcbs2021 First talk from internatioinal speaker Claudia Kleinmann on Pediatric Brain Tumours. #singleCell
GM using copy number profiles from TCGA genomes to perform Negative Matrix Factorisation, finding recurring copy number signatures. #vcbs2021
AC modelling non-genetic resistance, with the main difference being that resistant cells can reverse state to become sensitive again. #vcbs2021
MW points out that many cancers acquire resistance to PARP1 inhibitors, the most difficult to deal with being mutations in PARP1 itself. MW goes on to study functionality of all mutations in PARP1 using maveDB and molecular dynamics. #vcbs2021
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