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#spatialtranscriptomics search results

jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
4 h

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…

jsantoyo's tweet image. CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 28

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Oct 13

#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…

HaoYin20's tweet image. #SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
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NancyZh60672287's profile picture. Genomics, Computational Biology, Professor of Statistics and Data Science at UPenn
Nancy Zhang
 @NancyZh60672287
Jan 17, 2024

How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9

NancyZh60672287's tweet image. How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Oct 4

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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10xGenomics's profile picture. Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
10x Genomics
 @10xGenomics
Sep 2

Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz

10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 1

#SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…

HaoYin20's tweet image. #SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…
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DanielZucha's profile picture. Spending days with Neurobiology | Bioinformatics | Human nature. Don't believe your ideas, test them. 🧠⚡️PhD student in @labgenex, mentored by @LukasValihrach
Daniel Žucha
 @DanielZucha
Oct 11

⚡️Exciting Breakthrough in Progressive Multiple Sclerosis⚡️ Much humbled to contribute to this exciting project from @Pluchinolab . Analysing 200+ sections from 50+ patients, showcases the power of #spatialtranscriptomics in rare cell localization. 🧠 @IBT_CAS @LukasValihrach

Telencephale's profile picture. neural stem cells & the choroid plexus in progressive MS using patient-based 2D and 3D cellular models Incoming assistant professor @UAMShealth March 2026
Alexandra Nicaise
 @Telencephale
Oct 11

Proud to see our work out in @NeuroCellPress ! cell.com/neuron/fulltex… With Bongsoo Park, Dimitris Tsitsipatis @DanielZucha @LukasValihrach @irina_mohorianu @Pluchinolab @BeermanHSCaging !

Telencephale's tweet card. Park, Nicaise, Tsitsipatis, and colleagues discover transcriptional and epigenetic markers in human PMS iNSCs and fibroblasts that may underlie their senescent and inflammatory state. Novel DARGs...
Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated...
Source: cell.com
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OhioStatePIIO's profile picture. Pelotonia Institute for Immuno-Oncology. A bench-to-bedside research initiative accelerating therapeutics that use the immune system to fight cancer. #PIIO
Pelotonia Institute for Immuno-Oncology
@OhioStatePIIO
Sep 19

🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…

OhioStatePIIO's tweet image. 🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
Jan 30

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025

LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
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Valeriechew29's profile picture. Cancer immunologist, liver cancer, translational immunology @Singhealth. Assoc Prof @DukeNUS
Valerie Chew
 @Valeriechew29
Nov 8, 2023

Good food and science. What more can I ask for? #cancerimmunology #spatialtranscriptomics

Valeriechew29's tweet image. Good food and science. What more can I ask for? #cancerimmunology #spatialtranscriptomics
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 15

#SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…

HaoYin20's tweet image. #SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…
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FanZhang_Jessie's profile picture. Principal Investigator | Zhang lab @CUAnschutz @CUHealthAI @CURheumatology | #SingleCell #ML #AI #TranslationalMedicine | Alumni @harvardmed @broadinstitute
Dr. Fan Zhang ⛵️
 @FanZhang_Jessie
Aug 12

Thrilled 🎉 to shared I received my R01 NoA today @NIH_NIAMS! We will continue pushing the frontiers of autoimmune research by developing novel #AI #MachineLearning for #SpatialTranscriptomics and #SingleCell modalities 🧬💻💊! @CUAnschutz @CUDeptMedicine @CUBiomedInfo

FanZhang_Jessie's tweet image. Thrilled 🎉 to shared I received my R01 NoA today @NIH_NIAMS! We will continue pushing the frontiers of autoimmune research by developing novel #AI #MachineLearning for #SpatialTranscriptomics and #SingleCell modalities 🧬💻💊! @CUAnschutz @CUDeptMedicine @CUBiomedInfo
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
Sep 4

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. #LongReads #SingleCell #Spatialtranscriptomics #IsoSeq #PolyA @NatureComms nature.com/articles/s4146…

jsantoyo's tweet image. A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. #LongReads #SingleCell #Spatialtranscriptomics #IsoSeq #PolyA @NatureComms nature.com/articles/s4146…
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ScienceStowers's profile picture. Celebrating 25 years of discovery. #Stowers25
Stowers Institute
 @ScienceStowers
Jun 15, 2023

Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR

ScienceStowers's tweet image. Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
Mar 23

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet

LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
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DiannaHNguyen1's profile picture. Resident Physician @UTHPMR | #Physiatry | @AOCPMR National Resident Council | @utarlington @TCOM_UNTHSC @SBS_UNTHSC Alum
Dianna H. Nguyen, DO, PhD
 @DiannaHNguyen1
Mar 27, 2024

GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A

DiannaHNguyen1's tweet image. GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A
DiannaHNguyen1's tweet image. GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
Sep 24

Systematic benchmarking of computational methods to identify spatially variable genes. #SpatialTranscriptomics #MethodsBenchmarking @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…

jsantoyo's tweet image. Systematic benchmarking of computational methods to identify spatially variable genes. #SpatialTranscriptomics #MethodsBenchmarking @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
4 h

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…

jsantoyo's tweet image. CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…
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Decode_Science's profile picture. We are Australia and New Zealand distributors, helping scientists by providing world class genomics products and trusted technical support.
Decode Science
 @Decode_Science
16 h

Wrapping up an incredible week at #AGTA2025! Grateful to everyone who dropped by our booth. Big thanks to Damian for his talk on the world-first @ParseBio experiment in human malaria–infected spleen samples. #Genomics #SpatialTranscriptomics #EnablingDiscovery

Decode_Science's tweet image. Wrapping up an incredible week at #AGTA2025! Grateful to everyone who dropped by our booth. Big thanks to Damian for his talk on the world-first @ParseBio experiment in human malaria–infected spleen samples. #Genomics #SpatialTranscriptomics #EnablingDiscovery
Decode_Science's tweet image. Wrapping up an incredible week at #AGTA2025! Grateful to everyone who dropped by our booth. Big thanks to Damian for his talk on the world-first @ParseBio experiment in human malaria–infected spleen samples. #Genomics #SpatialTranscriptomics #EnablingDiscovery
Decode_Science's tweet image. Wrapping up an incredible week at #AGTA2025! Grateful to everyone who dropped by our booth. Big thanks to Damian for his talk on the world-first @ParseBio experiment in human malaria–infected spleen samples. #Genomics #SpatialTranscriptomics #EnablingDiscovery
Decode_Science's tweet image. Wrapping up an incredible week at #AGTA2025! Grateful to everyone who dropped by our booth. Big thanks to Damian for his talk on the world-first @ParseBio experiment in human malaria–infected spleen samples. #Genomics #SpatialTranscriptomics #EnablingDiscovery
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CR_AACR's profile picture. The foundational, flagship journal of @AACR. Published since 1941.
Cancer Research
 @CR_AACR
Oct 16

New in the October 15 issue from the Cancer Research special series— From Harmony to Discord: Multicellular Coordination in Tissues and Its Rewiring in Cancer doi.org/10.1158/0008-5… @drmervedede @kchenken @MDAndersonNews #SingleCellTranscriptomics #SpatialTranscriptomics

CR_AACR's tweet image. New in the October 15 issue from the Cancer Research special series— From Harmony to Discord: Multicellular Coordination in Tissues and Its Rewiring in Cancer doi.org/10.1158/0008-5… @drmervedede @kchenken @MDAndersonNews #SingleCellTranscriptomics #SpatialTranscriptomics
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Oct 13

#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…

HaoYin20's tweet image. #SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
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DanielZucha's profile picture. Spending days with Neurobiology | Bioinformatics | Human nature. Don't believe your ideas, test them. 🧠⚡️PhD student in @labgenex, mentored by @LukasValihrach
Daniel Žucha
 @DanielZucha
Oct 11

⚡️Exciting Breakthrough in Progressive Multiple Sclerosis⚡️ Much humbled to contribute to this exciting project from @Pluchinolab . Analysing 200+ sections from 50+ patients, showcases the power of #spatialtranscriptomics in rare cell localization. 🧠 @IBT_CAS @LukasValihrach

Telencephale's profile picture. neural stem cells & the choroid plexus in progressive MS using patient-based 2D and 3D cellular models Incoming assistant professor @UAMShealth March 2026
Alexandra Nicaise
 @Telencephale
Oct 11

Proud to see our work out in @NeuroCellPress ! cell.com/neuron/fulltex… With Bongsoo Park, Dimitris Tsitsipatis @DanielZucha @LukasValihrach @irina_mohorianu @Pluchinolab @BeermanHSCaging !

Telencephale's tweet card. Park, Nicaise, Tsitsipatis, and colleagues discover transcriptional and epigenetic markers in human PMS iNSCs and fibroblasts that may underlie their senescent and inflammatory state. Novel DARGs...
Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated...
Source: cell.com
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GENbio's profile picture. Serving the biotech industry since 1981. EIC @johnsterling4; publisher @liebertpub Subscribe to GEN: https://t.co/KzqMccOt9Q
Genetic Engineering & Biotechnology News
 @GENbio
Oct 8

ChatGPT-Like AI Model Details 1,300 Regions/Subregions in Mouse Brain Map Tissue-agnostic CellTransformer can be used on other organs and tissues, including cancerous tissue, for which large-scale #spatialtranscriptomics data is available @UCSF #brain #AI hubs.li/Q03MQQXq0

GENbio's tweet card. Tissue-agnostic CellTransformer can be used on other organs and tissues, including cancerous tissue, for which large-scale spatial transcriptomics data is available.
ChatGPT-Like AI Model Details 1,300 Regions/Subregions in Mouse Brain Map
Source: genengnews.com
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Decode_Science's profile picture. We are Australia and New Zealand distributors, helping scientists by providing world class genomics products and trusted technical support.
Decode Science
 @Decode_Science
Oct 8

🚀 Pilot Now Open: @ST_Omics OMNI with @SA_genomics & Decode Science Perfect for generating pilot data, exploring new projects, and strengthening grant applications. 🔗 Learn more: app-ap1.hubspotdocuments.com/documents/2389… #SpatialTranscriptomics #SingleCell #Genomics #EnablingDiscovery

SA_genomics's profile picture. A not-for-profit, providing a broad range of standard and custom Genomic and Bioinformatic services at a state-of-the-art level.
South Australian Genomics Centre (SAGC)
 @SA_genomics
Oct 7

Now Open! STOmics OMNI pilot - SAGC, @Decode_Science - spatial RNA from FFPE—end-to-end service. Why STOmics OMNI? ✅ Species-agnostic ✅ Random hexamers (total RNA) ✅ 10×10 mm area at high res (500 nm) ✅ End-to-end workflow Get your projects ready→ap1.hubs.ly/y0hZyD0

SA_genomics's tweet image. Now Open! STOmics OMNI pilot - SAGC, @Decode_Science - spatial RNA from FFPE—end-to-end service. Why STOmics OMNI? ✅ Species-agnostic ✅ Random hexamers (total RNA) ✅ 10×10 mm area at high res (500 nm) ✅ End-to-end workflow Get your projects ready→ap1.hubs.ly/y0hZyD0
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Oct 4

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 28

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 28

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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NancyZh60672287's profile picture. Genomics, Computational Biology, Professor of Statistics and Data Science at UPenn
Nancy Zhang
 @NancyZh60672287
Jan 17, 2024

How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9

NancyZh60672287's tweet image. How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9
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10xGenomics's profile picture. Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
10x Genomics
 @10xGenomics
Sep 2

Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz

10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
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simocristea's profile picture. cancer genomics AI scientist; head of Data Science & AI and group leader @DanaFarber_Hale; research scientist @Harvard; phd @eth.🇷🇴🇸🇪🇨🇭🇺🇸
Simona Cristea
@simocristea
Feb 23, 2023

🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]

simocristea's tweet image. 🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]
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ScienceStowers's profile picture. Celebrating 25 years of discovery. #Stowers25
Stowers Institute
 @ScienceStowers
Jun 15, 2023

Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR

ScienceStowers's tweet image. Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
4 h

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…

jsantoyo's tweet image. CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…
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BrantBassamPhD's profile picture. Spatial biology specialist—technophile—publisher—artist—atheist —Elon —David Deutsch—Thomas Sowell. Show me the data. Opinions are mine.
Brant Bassam
@BrantBassamPhD
Nov 21, 2023

We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…

BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 1

#SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…

HaoYin20's tweet image. #SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Sep 15

#SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…

HaoYin20's tweet image. #SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…
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OhioStatePIIO's profile picture. Pelotonia Institute for Immuno-Oncology. A bench-to-bedside research initiative accelerating therapeutics that use the immune system to fight cancer. #PIIO
Pelotonia Institute for Immuno-Oncology
@OhioStatePIIO
Sep 19

🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…

OhioStatePIIO's tweet image. 🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…
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manoliskellis's profile picture. Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Manolis Kellis
@manoliskellis
Apr 20, 2023

Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…

manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
Oct 4

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
Mar 23

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet

LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
Jan 30

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025

LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
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LukasValihrach's profile picture. Group Leader | GliaOmics Lab & GeneCore Facility | 🧬Single-Cell & Spatial Transcriptomics | 🧠 Glial Cells in Health & Disease | @IBT_CAS 🇪🇺 | ❤️ My Twins
Lukas Valihrach
 @LukasValihrach
Jul 27, 2023

Wow, this is big! Congrats to all authors!👏 👉 Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's Disease 👉 biorxiv.org/content/10.110… #SpatialTranscriptomics #Visium #snRNAseq #ParseBiosciences

LukasValihrach's tweet image. Wow, this is big! Congrats to all authors!👏 👉 Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's Disease 👉 biorxiv.org/content/10.110… #SpatialTranscriptomics #Visium #snRNAseq #ParseBiosciences
swaruplab1's profile picture. Neurogenomics Research Lab
swaruplab
 @swaruplab1
Jul 26, 2023

Our work on spatial multiomics in Alzheimer’s disease and Down syndrome now on bioRxiv biorxiv.org/content/10.110…

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ScienceinBoston's profile picture. Your complete source for life science news and events in the Greater Boston Area. Brought to you by the Science in the City program at @STEMCELLTech.
Science in Boston
@ScienceinBoston
Apr 15

🔬 A new computational approach pioneered by researchers at the @broadinstitute eliminates time-intensive imaging, enabling high-resolution spatial mapping of gene expression in tissue. See how they're making #SpatialTranscriptomics easier for everyone: bit.ly/3G9Hrau

ScienceinBoston's tweet image. 🔬 A new computational approach pioneered by researchers at the @broadinstitute eliminates time-intensive imaging, enabling high-resolution spatial mapping of gene expression in tissue. See how they're making #SpatialTranscriptomics easier for everyone: bit.ly/3G9Hrau
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
Mar 13, 2023

Pleased to share our latest #SpatialTranscriptomics output now on @biorxivpreprint We show marked variation in gene expr relating to @Decipher_VCYT, #Oncotype_DX & #ProstaDiag genomic scores Being presented by @Sandy_Figiel this afternoon #EAU23!! biorxiv.org/content/10.110…

LambAlastair's tweet image. Pleased to share our latest #SpatialTranscriptomics output now on @biorxivpreprint We show marked variation in gene expr relating to @Decipher_VCYT, #Oncotype_DX & #ProstaDiag genomic scores Being presented by @Sandy_Figiel this afternoon #EAU23!! biorxiv.org/content/10.110…
LambAlastair's tweet image. Pleased to share our latest #SpatialTranscriptomics output now on @biorxivpreprint We show marked variation in gene expr relating to @Decipher_VCYT, #Oncotype_DX & #ProstaDiag genomic scores Being presented by @Sandy_Figiel this afternoon #EAU23!! biorxiv.org/content/10.110…
LambAlastair's tweet image. Pleased to share our latest #SpatialTranscriptomics output now on @biorxivpreprint We show marked variation in gene expr relating to @Decipher_VCYT, #Oncotype_DX & #ProstaDiag genomic scores Being presented by @Sandy_Figiel this afternoon #EAU23!! biorxiv.org/content/10.110…
LambAlastair's tweet image. Pleased to share our latest #SpatialTranscriptomics output now on @biorxivpreprint We show marked variation in gene expr relating to @Decipher_VCYT, #Oncotype_DX & #ProstaDiag genomic scores Being presented by @Sandy_Figiel this afternoon #EAU23!! biorxiv.org/content/10.110…
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NeuroAlc's profile picture. Instituto de Neurociencias UMH-CSIC. Centro de Excelencia Severo Ochoa - Institute for Neuroscience UMH-CSIC, Severo Ochoa Centre of Excellence.
Instituto de Neurociencias UMH-CSIC
 @NeuroAlc
Dec 14, 2023

[ENG] The @NeuroAlc and #IzasaScientifics have joined forces to bring #SpatialTranscriptomics #MERFISH to Spain💪 It’s the first device that offers this technology in the Iberian Peninsula and is located at the IN Omics Facility. More info here👇 in.umh-csic.es/en/el-institut… #MERSCOPE

NeuroAlc's tweet image. [ENG] The @NeuroAlc and #IzasaScientifics have joined forces to bring #SpatialTranscriptomics #MERFISH to Spain💪 It’s the first device that offers this technology in the Iberian Peninsula and is located at the IN Omics Facility. More info here👇 in.umh-csic.es/en/el-institut… #MERSCOPE
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