#transcriptomics search results

Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner. #Transcriptomics #LongReads #Sequencing #Bioinformatics @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…

jsantoyo's tweet image. Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner. #Transcriptomics #LongReads #Sequencing #Bioinformatics @GenomeBiology 
genomebiology.biomedcentral.com/articles/10.11…

Review by Aho et al. Advances in plant spatial multi-omics data analysis A step-by-step guidance for spatial multi-#omics data analysis workflow in plants. Summarizes tools for data preprocessing & downstream analyses. #transcriptomics #metabolomics cell.com/trends/plant-s…

AgriExperts's tweet image. Review by Aho et al.
Advances in plant spatial multi-omics data analysis

A step-by-step guidance for spatial multi-#omics data analysis workflow in plants. Summarizes tools for data preprocessing & downstream analyses. #transcriptomics  #metabolomics     
cell.com/trends/plant-s…

🚨 New paper in @RSOpenScience 🦟 Plasmodium relictum tweaks mosquito metabolism & behavior to boost transmission 🧬🐦 #AvianMalaria #VectorBiology #Transcriptomics 👉 royalsocietypublishing.org/doi/10.1098/rs…

luzglongoria's tweet image. 🚨 New paper in @RSOpenScience
🦟 Plasmodium relictum tweaks mosquito metabolism & behavior to boost transmission 🧬🐦

#AvianMalaria #VectorBiology #Transcriptomics
👉 royalsocietypublishing.org/doi/10.1098/rs…

Creating Space for Smarter Drug Discovery Drug discovery is becoming more personalized, and the methods used to generate therapeutic insights are advancing alongside it. Sponsored by @SampledLabs #DrugDiscovery #SpatialBiology #transcriptomics hubs.li/Q03RzTPW0


DgeaHeatmap: An R Package for Transcriptomic Analysis and Heatmap Generation. #Transcriptomics #Heatmaps #Genomics #R academic.oup.com/bioinformatics…

jsantoyo's tweet image. DgeaHeatmap: An R Package for Transcriptomic Analysis and Heatmap Generation. #Transcriptomics #Heatmaps #Genomics #R
academic.oup.com/bioinformatics…

Single-cell transcriptomic and genomic changes in the ageing human brain. #SingleCel #scRNAseq #Transcriptomics #Genomics #HumanBrain @nature nature.com/articles/s4158…

jsantoyo's tweet image. Single-cell transcriptomic and genomic changes in the ageing human brain. #SingleCel #scRNAseq #Transcriptomics #Genomics #HumanBrain @nature
nature.com/articles/s4158…

GTEx (@GTExPortal), the most comprehensive multi-tissue #transcriptomics resource out there, has now released a new data version (v10)📢 👉12% more RNA-seq samples in total 👉23% more samples in eQTL analyses 🔗gtexportal.org/home/home/news…

MariosGeorgakis's tweet image. GTEx (@GTExPortal), the most comprehensive multi-tissue #transcriptomics resource out there, has now released a new data version (v10)📢

👉12% more RNA-seq samples in total
👉23% more samples in eQTL analyses

🔗gtexportal.org/home/home/news…

Preprint! 4 years of work, 9 labs, 402 RNA-seq samples, 22 ferns, #histology and #biochemistry. Outcome: 'Comparative #transcriptomics in #ferns reveals key innovations and divergent #evolution of secondary cell wall' #plantsci biorxiv.org/content/10.110…

LabMutwil's tweet image. Preprint! 4 years of work, 9 labs, 402 RNA-seq samples, 22 ferns, #histology and #biochemistry. Outcome: 'Comparative #transcriptomics in #ferns reveals key innovations and divergent #evolution of secondary cell wall' #plantsci 
biorxiv.org/content/10.110…

Honored that our #Agrobacterium #transcriptomics study was among the most read in Microbial Genomics @MicrobioSoc. doi.org/10.1099/mgen.0… Grateful to @AdamWu9527, @erhminlai, and our @IPMBSinica team for making this collaboration possible.

Comparative transcriptomics of #Agrobacterium * Strain 1D1108 shows superior transformation efficiency * Plant environment triggers >1,000 DEGs beyond lab conditions * Expression regulation is both context- and strain-specific doi.org/10.1099/mgen.0…

ChihHorngKuo's tweet image. Comparative transcriptomics of #Agrobacterium
* Strain 1D1108 shows superior transformation efficiency
* Plant environment triggers >1,000 DEGs beyond lab conditions
* Expression regulation is both context- and strain-specific
doi.org/10.1099/mgen.0…


New research in the latest #G3journal issue uses #transcriptomics to identify molecular signatures responsible for Hypertrophic cardiomyopathy, an inherited cardiac disease in cats that causes congestive heart failure and sudden cardiac death. buff.ly/TxYNbIa

GeneticsGSA's tweet image. New research in the latest #G3journal issue uses #transcriptomics to identify molecular signatures responsible for Hypertrophic cardiomyopathy, an inherited cardiac disease in cats that causes congestive heart failure and sudden cardiac death. buff.ly/TxYNbIa

Are metastatic #cancers more like their normal origin or target tissues? Our work in @ScienceAdvances systematically compares the #transcriptomics of primary and metastatic #tumors to healthy tissues in a #PanCancer, genome-wide manner! #metastasis 🧵1/10 shorturl.at/Uc4xx

EytanRuppin's tweet image. Are metastatic #cancers more like their normal origin or target tissues? Our work in @ScienceAdvances systematically compares the #transcriptomics of primary and metastatic #tumors to healthy tissues in a #PanCancer, genome-wide manner! #metastasis 🧵1/10 shorturl.at/Uc4xx

🧬 Discover how spatial transcriptomics is transforming biology! Join Dr. Brett Kennedy (10x Genomics) for an exciting session today, in our #ScientificSeminarSeries.✨ #SpatialBiology #Transcriptomics #10xGenomics @10xGenomics


'Molecular hallmarks of excitatory and inhibitory neuronal resilience to #AlzheimersDisease' Isabel Castanho, Pourya Naderi Yeganeh...Rudolph E. Tanzi @RudyTanzi & Winston Hide @harvardmed @BIDMChealth #CognitiveResilience #transcriptomics #genetics …arneurodegeneration.biomedcentral.com/articles/10.11…

MolNeuro's tweet image. 'Molecular hallmarks of excitatory and inhibitory neuronal resilience to #AlzheimersDisease'

Isabel Castanho, Pourya Naderi Yeganeh...Rudolph E. Tanzi @RudyTanzi & Winston Hide @harvardmed @BIDMChealth 

#CognitiveResilience #transcriptomics #genetics

…arneurodegeneration.biomedcentral.com/articles/10.11…

Why are half of people with Down syndrome born with heart defects? That’s what @SanjeevRanade & Feiya Li et al. uncovered in a new study using single-cell #transcriptomics + #SmartSPIM imaging to characterize the impact of trisomy 21 on heart development: hubs.li/Q03QLB440


Adaptation when tied together as lichen: circadian- and temperature-associated genes for fungi and light-responsive genes for algae show climate-specific patterns. royalsocietypublishing.org/doi/epdf/10.10… #lichens #symbioses #transcriptomics #climate #niche

symbiodeme's tweet image. Adaptation when tied together as lichen: circadian- and temperature-associated genes for fungi and light-responsive genes for algae show climate-specific patterns.

royalsocietypublishing.org/doi/epdf/10.10…

#lichens #symbioses #transcriptomics #climate #niche

who knew spatial #transcriptomics could be so beautiful? segmented #paraventricular #thalamus (PVT) cells showing off their multicolored gene expression, using #MERFISH #fluorescence_friday

z_baram's tweet image. who knew spatial #transcriptomics could be so beautiful? segmented #paraventricular #thalamus (PVT) cells showing off their multicolored gene expression, using #MERFISH #fluorescence_friday

The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity. #ChickenVariants #Transcriptomics #Genomics #NAR academic.oup.com/nar/advance-ar…

jsantoyo's tweet image. The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity.  #ChickenVariants #Transcriptomics #Genomics #NAR 
academic.oup.com/nar/advance-ar…

🚀 317 R scripts for biomedical research, no coding barrier ⏱️ Standardized design saves time ✅ Verified, annotated, reproducible 🧬 Covers #scRNA-seq, spatial #transcriptomics, #ML & more Developed by @guangchuangyu and @PengL_Robin 🔗doi.org/10.1002/imm3.7… #Bioinformatics


📢 The November issue is now open! Opening the issue: Integrating transcriptomic profiling & machine learning for a clinically actionable prognostic model in infant AML. Read now 👉 bit.ly/43SOq0i #AML #MachineLearning #Transcriptomics


🔔#Allergies_MDPI Welcomes you to read our publication "A Treatment-Resistant Severe #Asthma Phenotype with Dysregulated Hippo Pathway as Shown by Sputum #Transcriptomics and #Proteomics" by Dr. Emília Ma. Medeiros de Andrade Belitardo et al. ✅Link: brnw.ch/21wXfeJ

Allergies_MDPI's tweet image. 🔔#Allergies_MDPI Welcomes you to read our publication "A Treatment-Resistant Severe #Asthma Phenotype with Dysregulated Hippo Pathway as Shown by Sputum #Transcriptomics and #Proteomics" by Dr. Emília Ma. Medeiros de Andrade Belitardo et al.

✅Link: brnw.ch/21wXfeJ

How do venoms evolve their deadly diversity? 🔍🐍 The latest Special Issue of Toxins dives deep using #Transcriptomics & #Proteomics. Explore the genetics behind nature's most sophisticated biochemical arsenals. #Venom #Toxins #biodiscovery Details: mdpi.com/si/260406

Toxins_MDPI's tweet image. How do venoms evolve their deadly diversity? 🔍🐍 The latest Special Issue of Toxins dives deep using #Transcriptomics & #Proteomics. Explore the genetics behind nature's most sophisticated biochemical arsenals.  #Venom #Toxins #biodiscovery

Details: mdpi.com/si/260406

Creating Space for Smarter Drug Discovery Drug discovery is becoming more personalized, and the methods used to generate therapeutic insights are advancing alongside it. Sponsored by @SampledLabs #DrugDiscovery #SpatialBiology #transcriptomics hubs.li/Q03RzTPW0


RNA-seq Analysis using R 26–29 Jan | A practical 4-day course covering the full RNA-seq workflow from raw reads to results using R and leading bioinformatics tools. Instructor: Dr Frances Turner prstats.org/course/rna-seq… #RNAseq #Transcriptomics #Bioinformatics #Genomics #Rstats

pr_stats's tweet image. RNA-seq Analysis using R
26–29 Jan |
A practical 4-day course covering the full RNA-seq workflow from raw reads to results using R and leading bioinformatics tools.

Instructor: Dr Frances Turner

prstats.org/course/rna-seq…

#RNAseq #Transcriptomics #Bioinformatics #Genomics #Rstats

We are proud to announce our new collaboration with @AlitheaGenomics to provide an automated solution for single-cell transcriptomics on the firefly® platform. Read more 🔗go.sptlabtech.com/3Lf2XgC #Transcriptomics #SingleCell #LabAutomation

SPTLabtech's tweet image. We are proud to announce our new collaboration with @AlitheaGenomics to provide an automated solution for single-cell transcriptomics on the firefly® platform.

Read more 🔗go.sptlabtech.com/3Lf2XgC
 
#Transcriptomics #SingleCell #LabAutomation

Which RNA-seq do you need? ➡️ For coding gene expression: Use mRNA-seq. It's focused & economical. ➡️ For a complete view (incl. lncRNAs): Use Total RNA-seq. It captures all non-rRNA transcripts. cd-genomics.com/mrna-sequencin… #RNAseq #Genomics #Transcriptomics #NGS

CDGenomics2005's tweet image. Which RNA-seq do you need?
➡️ For coding gene expression: Use mRNA-seq. It's focused & economical.
➡️ For a complete view (incl. lncRNAs): Use Total RNA-seq. It captures all non-rRNA transcripts.
cd-genomics.com/mrna-sequencin…
#RNAseq #Genomics #Transcriptomics #NGS

A single-cell atlas of osteochondral composite tissue identified three novel chondrocytes subtypes, all of which play a critical role in the #Pathogenesis and progression of #KneeOsteoarthritis. #Transcriptomics Read this #STTT #OpenAccess: doi.org/10.1038/s41392…

sigtrans_sttt's tweet image. A single-cell atlas of osteochondral composite tissue identified three novel chondrocytes subtypes, all of which play a critical role in the #Pathogenesis and progression of #KneeOsteoarthritis. #Transcriptomics

Read this #STTT #OpenAccess: doi.org/10.1038/s41392…

🧬 Discover how spatial transcriptomics is transforming biology! Join Dr. Brett Kennedy (10x Genomics) for an exciting session today, in our #ScientificSeminarSeries.✨ #SpatialBiology #Transcriptomics #10xGenomics @10xGenomics


🧬 Discover how spatial transcriptomics is transforming biology! Join Dr. Brett Kennedy (10x Genomics) for an exciting session in our #ScientificSeminarSeries. #SpatialBiology #transcriptomics #10xGenomics @10xGenomics


Spatial Genomics And #Transcriptomics Market size was valued at USD 629.53 Million in 2024 and is projected to reach USD 1,212.43 Million by 2032, growing at a CAGR of 9.82% from 2026 to 2032. Read @ verifiedmarketresearch.com/product/spatia…


Wish you knew more about RNA Sequencing? This blog will tell you everything you need to know! fiosgenomics.com/benefits-rna-s… #rnaseq #rnasequencing #transcriptomics #datanalysis

fiosgenomics's tweet image. Wish you knew more about RNA Sequencing? This blog will tell you everything you need to know! fiosgenomics.com/benefits-rna-s…
#rnaseq #rnasequencing #transcriptomics #datanalysis

Review by Aho et al. Advances in plant spatial multi-omics data analysis A step-by-step guidance for spatial multi-#omics data analysis workflow in plants. Summarizes tools for data preprocessing & downstream analyses. #transcriptomics #metabolomics cell.com/trends/plant-s…

AgriExperts's tweet image. Review by Aho et al.
Advances in plant spatial multi-omics data analysis

A step-by-step guidance for spatial multi-#omics data analysis workflow in plants. Summarizes tools for data preprocessing & downstream analyses. #transcriptomics  #metabolomics     
cell.com/trends/plant-s…

#GrassResearch #HeatStress #Transcriptomics 🌾Transcriptomic study on perennial ryegrass identifies 5,399 common heat-responsive DEGs & variety-specific hub genes. @MaximumAcademic Details: maxapress.com/article/doi/10…

GrassResearch's tweet image. #GrassResearch #HeatStress  #Transcriptomics 
🌾Transcriptomic study on perennial ryegrass  identifies 5,399 common heat-responsive DEGs & variety-specific hub genes. 
@MaximumAcademic 
Details: maxapress.com/article/doi/10…

Why are half of people with Down syndrome born with heart defects? That’s what @SanjeevRanade & Feiya Li et al. uncovered in a new study using single-cell #transcriptomics + #SmartSPIM imaging to characterize the impact of trisomy 21 on heart development: hubs.li/Q03QLB440


x.com/PSYRAD2/status… Methods: Data: imaging blood RNA sequencing data from 43 schizophrenia patients and 60 HC. Multi-omics features of macroscale brain morphology, SC, FC, and related gene transcription were extracted. Machine learning methods was performed.#transcriptomics

🌟Editor’s Pick of the Week 🤯This study aims to systematically evaluate the impact of multi-scale neuroimaging and transcriptomic data fusion in schizophrenia classification models. Full paper:  doi.org/10.1093/psyrad… #schizophrenia #machine_learning #genomics #transcriptomics



Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner. #Transcriptomics #LongReads #Sequencing #Bioinformatics @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…

jsantoyo's tweet image. Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner. #Transcriptomics #LongReads #Sequencing #Bioinformatics @GenomeBiology 
genomebiology.biomedcentral.com/articles/10.11…

DgeaHeatmap: An R Package for Transcriptomic Analysis and Heatmap Generation. #Transcriptomics #Heatmaps #Genomics #R academic.oup.com/bioinformatics…

jsantoyo's tweet image. DgeaHeatmap: An R Package for Transcriptomic Analysis and Heatmap Generation. #Transcriptomics #Heatmaps #Genomics #R
academic.oup.com/bioinformatics…

'Molecular hallmarks of excitatory and inhibitory neuronal resilience to #AlzheimersDisease' Isabel Castanho, Pourya Naderi Yeganeh...Rudolph E. Tanzi @RudyTanzi & Winston Hide @harvardmed @BIDMChealth #CognitiveResilience #transcriptomics #genetics …arneurodegeneration.biomedcentral.com/articles/10.11…

MolNeuro's tweet image. 'Molecular hallmarks of excitatory and inhibitory neuronal resilience to #AlzheimersDisease'

Isabel Castanho, Pourya Naderi Yeganeh...Rudolph E. Tanzi @RudyTanzi & Winston Hide @harvardmed @BIDMChealth 

#CognitiveResilience #transcriptomics #genetics

…arneurodegeneration.biomedcentral.com/articles/10.11…

Single-cell transcriptomic and genomic changes in the ageing human brain. #SingleCel #scRNAseq #Transcriptomics #Genomics #HumanBrain @nature nature.com/articles/s4158…

jsantoyo's tweet image. Single-cell transcriptomic and genomic changes in the ageing human brain. #SingleCel #scRNAseq #Transcriptomics #Genomics #HumanBrain @nature
nature.com/articles/s4158…

📢 La semana pasada inauguramos seminarios de zoología en @infouex 🦜 Presenté alguno de mis resultados y tuvimos una discusión productiva. 😊 ¡Gracias a todos! Nos vemos en el próximo seminario. #Zoology #Transcriptomics #STEMmom #CienciaUEX 🌿🦟🐦

luzglongoria's tweet image. 📢 La semana pasada inauguramos seminarios de zoología en @infouex 🦜 Presenté alguno de mis resultados y tuvimos una discusión productiva. 😊 ¡Gracias a todos! Nos vemos en el próximo seminario. #Zoology #Transcriptomics #STEMmom #CienciaUEX 🌿🦟🐦

Excited as later today I will be starting my course (organised by @Physacourses) on Multidimensional Phenotypic Evolution #geometricmorphometrics #morphometrics #transcriptomics #evolution

CarmeloFruciano's tweet image. Excited as later today I will be starting my course (organised by @Physacourses) on Multidimensional Phenotypic Evolution #geometricmorphometrics #morphometrics #transcriptomics #evolution

🚨 New paper in @RSOpenScience 🦟 Plasmodium relictum tweaks mosquito metabolism & behavior to boost transmission 🧬🐦 #AvianMalaria #VectorBiology #Transcriptomics 👉 royalsocietypublishing.org/doi/10.1098/rs…

luzglongoria's tweet image. 🚨 New paper in @RSOpenScience
🦟 Plasmodium relictum tweaks mosquito metabolism & behavior to boost transmission 🧬🐦

#AvianMalaria #VectorBiology #Transcriptomics
👉 royalsocietypublishing.org/doi/10.1098/rs…

GTEx (@GTExPortal), the most comprehensive multi-tissue #transcriptomics resource out there, has now released a new data version (v10)📢 👉12% more RNA-seq samples in total 👉23% more samples in eQTL analyses 🔗gtexportal.org/home/home/news…

MariosGeorgakis's tweet image. GTEx (@GTExPortal), the most comprehensive multi-tissue #transcriptomics resource out there, has now released a new data version (v10)📢

👉12% more RNA-seq samples in total
👉23% more samples in eQTL analyses

🔗gtexportal.org/home/home/news…

📢We are hiring 2 #Postdocs to lead new research projects: 1 with expertise in #bioinformatics (#transcriptomics or image analysis) 1 with expertise in hiPSCs and #organoids Funded for 3-5 years. More information & instructions for application➡️ shorturl.at/sIQU9

AlainChedotal's tweet image. 📢We are hiring 2 #Postdocs to lead new research projects: 1 with expertise in #bioinformatics (#transcriptomics or image analysis) 1 with expertise in hiPSCs and #organoids Funded for 3-5 years.
More information & instructions for application➡️ shorturl.at/sIQU9

The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity. #ChickenVariants #Transcriptomics #Genomics #NAR academic.oup.com/nar/advance-ar…

jsantoyo's tweet image. The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity.  #ChickenVariants #Transcriptomics #Genomics #NAR 
academic.oup.com/nar/advance-ar…

Review by Aho et al. Advances in plant spatial multi-omics data analysis A step-by-step guidance for spatial multi-#omics data analysis workflow in plants. Summarizes tools for data preprocessing & downstream analyses. #transcriptomics #metabolomics cell.com/trends/plant-s…

AgriExperts's tweet image. Review by Aho et al.
Advances in plant spatial multi-omics data analysis

A step-by-step guidance for spatial multi-#omics data analysis workflow in plants. Summarizes tools for data preprocessing & downstream analyses. #transcriptomics  #metabolomics     
cell.com/trends/plant-s…

Interested in gene regulation in the #PTSD and major depressive brain? Check out our lab posters #SfN2023 #transcriptomics #singlecell #proteomics #genomics @YalePsych @WuTsaiYale

MattGirgenti's tweet image. Interested in gene regulation in the #PTSD and major depressive brain? Check out our lab posters #SfN2023 #transcriptomics #singlecell #proteomics #genomics @YalePsych @WuTsaiYale

Are metastatic #cancers more like their normal origin or target tissues? Our work in @ScienceAdvances systematically compares the #transcriptomics of primary and metastatic #tumors to healthy tissues in a #PanCancer, genome-wide manner! #metastasis 🧵1/10 shorturl.at/Uc4xx

EytanRuppin's tweet image. Are metastatic #cancers more like their normal origin or target tissues? Our work in @ScienceAdvances systematically compares the #transcriptomics of primary and metastatic #tumors to healthy tissues in a #PanCancer, genome-wide manner! #metastasis 🧵1/10 shorturl.at/Uc4xx

Excited to contribute to the landmark @biorxivpreprint article led by @eportacangen that benchmarks four different #spatial #transcriptomics platforms: VISIUM, VISIUM CytAssist, Xenium @10xGenomics, and CosMx @nanostringtech. Pros and cons, select the best for your study! Or…

ManelEsteller's tweet image. Excited to contribute to the landmark @biorxivpreprint article led by @eportacangen that benchmarks four different #spatial #transcriptomics platforms: VISIUM, VISIUM CytAssist, Xenium @10xGenomics, and CosMx @nanostringtech. Pros and cons, select the best for your study! Or…

Plant Expression Omnibus (expression.plant.tools) provides multiple comparative transcriptomic analyses. Preprint at biorxiv.org/content/10.110…. Stats: 103 species, 4.6M genes, 60K quality controlled samples, 42K samples annotated with 78 PO terms. 🌱☘️🍃#database #transcriptomics

LabMutwil's tweet image. Plant Expression Omnibus (expression.plant.tools) provides multiple comparative transcriptomic analyses. Preprint at biorxiv.org/content/10.110…. Stats: 103 species, 4.6M genes, 60K quality controlled samples, 42K samples annotated with 78 PO terms. 🌱☘️🍃#database #transcriptomics

🌶️ Why are some peppers bumpy? 🔬 Rugose surfaces form when epidermal cells lose organization, starting ~10 DPA. 🧬 Genes in microtubule dynamics & hormone signaling drive the trait. 📖 Yiqi Xie et al.🔗 brnw.ch/21wV3jK #Pepper #FruitTexture #Transcriptomics

Plants_MDPI's tweet image. 🌶️ Why are some peppers bumpy?

🔬 Rugose surfaces form when epidermal cells lose organization, starting ~10 DPA.
🧬 Genes in microtubule dynamics & hormone signaling drive the trait.

📖 Yiqi Xie et al.🔗 brnw.ch/21wV3jK

#Pepper #FruitTexture #Transcriptomics

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