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🧵Want to speed up your bioinformatics tasks? Stop looping. Start paralleling. Here’s how to use GNU parallel like a pro:
New release of #GNU Parallel pi.dk/0 New in this release pi.dk/2 See the intro videos pi.dk/1 10 secs installation: pi.dk/3 GNU Parallel - for people who live life in the parallel lane.
64コアで、64並列でsimlationを回してtopコマンドで状況を見るのは心地よい。簡単に並列処理を実現できるGNU parallelコマンドは素晴らしい。
5/ What Does GNU parallel Do? Unlike xargs, parallel intelligently distributes tasks across available CPU cores. 📌 Example: Run bwa mem on multiple samples in parallel ls *.fastq | parallel -j 8 "bwa mem ref.fa {} > {.}.sam"
방법이있습니다. gnu_parallel이라고 얘를쓰면 얘가 순차적으로 계산을 던집니다 그니까 예를들어 4노드 잡고 gnu_parallel써서 60개 돌린다하면 처음에 설정대로 각노드당 1개씩 4개잡돌다가 하나끝나면 다음거 자동으로돌리고... 뭐 job script 안에 그냥 런을 1000개씩넣는방법도있죠
Movie night? 📺 Check out Ada & Zangemann – A Tale of Software, Skateboards, and Raspberry Ice Cream! A great choice for those who want to skip the spooky vibes 🎃 this #Halloween or simply add a one more into their watchlist! Watch it here: youtu.be/ac3ZZ7WUuZM 🍿
youtube.com
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Ada & Zangemann - A Tale of Software, Skateboards, and Raspberry Ice...
Check out my new blog post, "GNU Parallel for Your Terminal Tasks" erolrecep.github.io/posts/gnuparal… #GNUParallel #OneLiners #Parallel #Terminal #Linux #HPC #HTC
Yet we receive essentially no support from these enterprises relative to the value we provide
The 2024 #YH4F Award Ceremony is just around the corner! 🎉 While we wait to see this year’s winners, check out the amazing projects that won in 2023! 🌟 Get inspired by last year's awesome participants! 🙌 fsfe.org/news/2023/news… #SoftwareFreedom #FreeSoftware *
The @EU_Commission has cut important funds for #FreeSoftware in a non-transparent decision. 💥 Raise your voice and take part in an ongoing consultation to ask for sustainable long-term funds for software freedom! We explain why and how: fsfe.org/news/2024/news…
In a world where technology can mean the difference between life and death, can we afford the restrictions proprietary software places on progress? Watch and share "Rewind" (Spoiler alert: the answer is "no".) u.fsf.org/rewind
Free Software (like #LibreOffice) is about far more than just zero-cost. It’s about the freedom to use, share and modify the software that we all rely on. Make sure that the European Commission doesn't cut funding for Free Software: blog.documentfoundation.org/blog/2024/09/1… @fsfe
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