Kevin Yip
@KevinYipLab
Professor, Sanford Burnham Prebys Medical Discovery Institute
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Our institute is looking for a faculty in the field of Computational Biology and Artificial Intelligence. HR didn't allow me to add this part to the job post, so here it is - "We have the best tacos and beaches in the country" ;) sbpdiscovery.hrmdirect.com/employment/job…
1/6 Are you really winning? 🤔️ We dive into 10 ML toolkits used in 3K+ papers and discovered some🤯 facts: ❌ Different tools give different AUPRC 🚨 Only 2/10 tools correctly implemented AUPRC 👀 Winners of ML contests ($$$) changed if using different tools See more in 🧵:
Glad to share our preprint "GET: a foundation model of transcription across human cell types" biorxiv.org/content/10.110… A interactive demo (beta) for regulatory analysis and structure catalog of transcription factor interactions can be viewed at huggingface.co/spaces/get-fou…
Great thanks for slides & science to @daifengwang @dspakowicz @rozowsky @JiahaoGao200 @leetx1010 @SnyderShot @barabasi @haiyuanyu @dovgreenbaum @gamzeandgursoy @ozgunharmanci @QuantumKKY @KevinYipLab @chengchao12. Appreciate very much the invitation from @iscb to #ISMBECCB2023!
We are delighted to share our recent work on methylation markers for #diabetickidneydisease. We profiled methylation in peripheral blood from 1271 patients with #T2D from #HongKongDiabetesRegister. With @KevinYipLab, we identified 40 (30 novel) CpG sites asso with eGFR
Methylation at CpG sites, measured in peripheral blood exhibit utility for risk stratification of #KidneyDisease in PPL with #T2D @NatureComms nature.com/articles/s4146… @DrRonaldMa1 @KSusztak
Great work by @jlhope1 and Linda Bradley! PSGL1 is very exciting.
So excited to share this final product with the world! A culmination of 5 years of hard work by so many people at @sbpdiscovery and beyond. Thanks again to the @AmericanCancer for their support of my fellowship! cell.com/cell-reports/f…
For #NationalDNADay, we highlight this recommendation of @MikkoRautiaine3 et al. graph-based pipeline for assembling complete, accurate diploid #genomes. @Nature @KevinYipLab facultyopinions.com/article/742536…
Here is an update on the new journal Aging Biology (from former EICs of Aging Cell). Aging Biology agingbiologyjournal.org Thanks to Antonov Foundation antonovfoundation.org and you all for your patience. Please re-Tweet. @agingdoc1 @AgingBiology
I am joining Padres Padel the Cause this year to raise fund for cancer research. Any donations would be highly appreciated! support.curebound.org/fundraiser/434…
Come learn about blood cancers at our Cancer Center Open House on Oct 13! Free registration at sbpdiscovery.org/openhouse
When I saw topologically associating domains (TADs) drawn as globular structures in review papers, I always wondered whether TADs really have functionally important 3D structures. If you also wonder about it, check out our new preprint: doi.org/10.1101/2022.0…
Graph neural networks can capture complex object relationships. Eg, they can identify cancer genes based on omic features and protein interactions. See our new NMI paper rdcu.be/cJcs4 by @xxmen21 and @cqhoneybear to find out the tricks!
I just had an NIH grant rejected by CSR prior to review because a figure legend creeped into the 0.5in margin. I wish NIH had other things to focus on than page margins, but be careful!
To help commemorate this year's annual Rare Disease Day Symposium, we spoke with the Omlers, whose son Damian is the only person in the world with his rare genetic mutation. Read the full story and learn more about the event bit.ly/35sv9Yv
Here is an alternative to BioRender that is TRULY FREE and actively maintained. Over 1500 vectorized images sorted by license type (all creative commons or MIT). Fully editable icons and soon they will launch an Inkscape library. Please RT. github.com/duerrsimon/bio…
We are pleased to announce that bioinformaticist Kevin Yip, Ph.D. has joined our Institute, where he will support large-scale data analysis across our labs and develop new tools and models for computational biology. Welcome, Kevin! bit.ly/34IVPni
A coverslip was added to the sample to facilitate imaging
GPUs, 101 GPUs have powered the deep learning revolution. However, most practitioners have very little idea how they work. If you want to get the most out of them, this is important knowledge to have. As it turns out, the basics are really easy to grasp. 🧵 👇
Happy New Year! Today I am leaving @DanaFarber and @Harvard to join @GV20oncotherapy full time. I will miss liulab-dfci.github.io of almost 20 years, my colleagues at @dfcidatascience and @CFCE_DanaFarber , but I am excited to start the new journey!
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