My last paper from my PhD thesis is finally out! doi.org/10.1093/gbe/ev… And Happy #TransposonDay2020 @J_I_Hoffman @TheHoffmanLab @sogohae
ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity 🧬🖥️🧪 Paper: biorxiv.org/content/10.110… #Rstats Code: github.com/Yunuuuu/ggalign Docs: yunuuuu.github.io/ggalign/ Book (Quarto): yunuuuu.github.io/ggalign-book/
Review: A phylogenetic approach to comparative genomics nature.com/articles/s4157… (read free: rdcu.be/d5BvD) 🧬🖥️🧪
Two decades ago, researchers started an experiment that would challenge the prevailing scientific understanding of plant communities. While modern agriculture treats diversity as inefficient, the Jena Experiment proved the opposite: complexity is the key to resilience.
Call for applications! The Godfrey Hewitt mobility award supports fieldwork or lab visits of young researchers in evolutionary biology. Details and application procedure at ow.ly/Mb1g50TIL1q
New paper alert! Check this out to learn how publicly available amphibian genomes vary in quality and repeat content. We also investigate synteny across all three amphibian orders 🐸🧬 onlinelibrary.wiley.com/doi/10.1111/17…
New paper on the genetic and fitness consequences of an extreme bottleneck on northern elephant seals nature.com/articles/s4155…
Dorado v0.8.0 #ncm24 release! - v5.0 DNA transformer model performance improved for A100/H100 via kernel fusing, quantisation and leveraging i8 tensor cores. - v5.1 RNA models with updated mod calling for m6A, pseU, and brand new calling of Inosine and m5C. - Improved…
We are excited to announce our first PhD position 🧑🔬 at the @SMNStuttgart! Join our research using both museum and fresh specimens of a bird hybrid zone to uncover loci underlying reproductive isolation and hybrid zone dynamics 🔎🧬. Apply by Oct 15: tinyurl.com/BUNTINGzone 🔁🐦
📢Intrigued by how color patterns drive speciation in birds? 🐦Join our team at @SMNS Dive into DFG-funded PhD research on hybrid zone dynamics and the role of color patterns in species formation using black-headed & red-headed buntings naturkundemuseum-bw.de/en/jobs Deadline: 15 Oct
📢Intrigued by how color patterns drive speciation in birds? 🐦Join our team at @SMNS Dive into DFG-funded PhD research on hybrid zone dynamics and the role of color patterns in species formation using black-headed & red-headed buntings naturkundemuseum-bw.de/en/jobs Deadline: 15 Oct
What drove the diversification of cacti? We built a phylogeny of >1k species and a dataset of 39 variables, and used ML to identify the most important forces. Abiotic forces and size are powerful, and aridity is weak. Complexity should not be ignored. 🏜️ nature.com/articles/s4146…
Indels: computational methods, evolutionary dynamics, and biological applications. #Indels #GeneticVariants @MolBioEvol academic.oup.com/mbe/advance-ar…
Genetic Signatures of Positive Selection in Human Populations Adapted to High Altitude in Papua New Guinea | Genome Biology and Evolution academic.oup.com/gbe/article/16…
Runs of Homozygosity (#ROHs) are a powerful tool to quantify genomic inbreeding. Yet, they haven't been applied to #fungi... until now! 1/3
Latest MinKNOW Update: • Alignment can be done while basecalling • RNA script and model updates • Support link directly from MinKNOW. • and more... Read here: bit.ly/4dyNpNn 1/4
Discovery of genetic diversity left behind by the bottleneck of cotton domestication communities.springernature.com/posts/discover…
SARS-CoV-2 provides an unprecedented opportunity to watch evolution occur in real time. It also happens to be showing the pervasiveness of many misconceptions about evolution, even among scientists with limited knowledge of evolutionary biology. Here's a list and explanations. 🧵
Digital telomere measurement by long-read sequencing distinguishes healthy aging from disease! It was published at Nature communications. #nanopore #long-read
Woolly mammoths survived on Wrangel Island until 2000 BC! But why did they go extinct? Were they doomed once stuck on the island? We went to Siberia, collected bones & teeth, and sequenced 21 complete genomes. Here is what we found (🧵) Paper in Cell: cell.com/cell/fulltext/…
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