flowuenne's profile picture. Bioinformatics Engineer at Seqera.

Florian Wünnemann

@flowuenne

Bioinformatics Engineer at Seqera.

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Check out the first release of our @nf_core @nextflowio pipeline for processing @ResolveBioSci Molecular Cartography data🤩! Had a lot of fun working on this with @KresBestak 🎉. Reach out to us if you have any questions or need help getting started!

Pipeline release! nf-core/molkart v1.0.0 - Spatial Circuit! Please see the changelog: github.com/nf-core/molkar…



Florian Wünnemann reposted

Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport 1. This study introduces a novel protein representation method using sliced-Wasserstein embedding (SWE) to aggregate residue-level outputs from protein language models (PLMs) into fixed-length,…

BiologyAIDaily's tweet image. Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport

1. This study introduces a novel protein representation method using sliced-Wasserstein embedding (SWE) to aggregate residue-level outputs from protein language models (PLMs) into fixed-length,…

Florian Wünnemann reposted

Happy to release a concise review of recent progress in sequence-structure co-generation for protein design. with our amazing intern @WChentong + @SarahAlamdari Carles Domingo-Enrich and @avapamini

KevinKaichuang's tweet image. Happy to release a concise review of recent progress in sequence-structure co-generation for protein design. 

with our amazing intern @WChentong + @SarahAlamdari Carles Domingo-Enrich and @avapamini
KevinKaichuang's tweet image. Happy to release a concise review of recent progress in sequence-structure co-generation for protein design. 

with our amazing intern @WChentong + @SarahAlamdari Carles Domingo-Enrich and @avapamini

Florian Wünnemann reposted

Writing the Response to Reviewers document

OdedRechavi's tweet image. Writing the Response to Reviewers document

Really excited for this talk by @GrapotteM about how to use Nextflow for training deep learning models! Really great to see Nextflow adoption in many new areas & fields!

Mathys Grapotte is joining our speaker lineup! 🤩 As a PostDoc at CRG in Notredame’s lab, Mathys will dive into "STIMULUS: A #Nextflow-Based Pipeline for Training Deep Learning Models" 🧠🚀 Don’t miss it! summit.nextflow.io/2024/barcelona…

nextflowio's tweet image. Mathys Grapotte is joining our speaker lineup! 🤩

As a PostDoc at CRG in Notredame’s lab, Mathys will dive into "STIMULUS: A #Nextflow-Based Pipeline for Training Deep Learning Models" 🧠🚀

Don’t miss it! summit.nextflow.io/2024/barcelona…


Florian Wünnemann reposted

It’s time for the #NextflowSummit BCN speaker series! 🎉 Let's welcome our first speaker Ziad Al Bkhetan, Product Manager at @AusBiocommons 🎤 He’ll present "The Australian ProteinFold Service: Interactive Prediction & Visualisation of Protein Structure" summit.nextflow.io/2024/barcelona…

nextflowio's tweet image. It’s time for the #NextflowSummit BCN speaker series! 🎉

Let's welcome our first speaker Ziad Al Bkhetan, Product Manager at @AusBiocommons 🎤 He’ll present "The Australian ProteinFold Service: Interactive Prediction & Visualisation of Protein Structure"
summit.nextflow.io/2024/barcelona…

Florian Wünnemann reposted

Happy to share Novae, our new foundation model for spatial transcriptomics data 💫 Load a pre-trained model and start using Novae in two lines of code! biorxiv.org/content/10.110… github.com/MICS-Lab/novae


Florian Wünnemann reposted

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities


Florian Wünnemann reposted

#scverse2024 conference is on! We, @scverse_team, couldn’t be more excited to meet everyone here! We all know each other and finally get to hang out together. Amazing moments for the “young” science!

MKoutrouli's tweet image. #scverse2024 conference is on! We, @scverse_team, couldn’t be more excited to meet everyone here! We all know each other and finally get to hang out together. Amazing moments for the “young” science!

I remember using @nextflowio for the first time and experiencing the portability, reproducibility and parallelization it provided. With Seqera you can now take this one step further and optimize your workflow resources, manage teams and scale your workflow executions! 🚀

Manage, Optimize, and Scale your @nextflowio workflows with Seqera “We reduced pipeline runtime from 8 to 1.5 days, enabling our customer to increase processing from 1 to 20 batches per week, ensuring the pipeline is not a bottleneck” 👉Try it for free: seqera.io/nextflow-seqer…

SeqeraLabs's tweet image. Manage, Optimize, and Scale your @nextflowio workflows with Seqera

“We reduced pipeline runtime from 8 to 1.5 days, enabling our customer to increase processing from 1 to 20 batches per week, ensuring the pipeline is not a bottleneck”

👉Try it for free: seqera.io/nextflow-seqer…


Florian Wünnemann reposted

Still time until 15th September to submit an abstract to join us in Berlin in the @SpatialBio conference 👇

Important information: The abstract deadline for the ESSB conference (December 12/13 2024) has been extended. It is now possible to hand in your abstract until September 15th! Submit and become part of the ESSB community! #spatialbiology #ESSB

SpatialBio's tweet image. Important information:  The abstract deadline for the ESSB conference (December 12/13 2024) has  been extended. It is now possible to hand in your abstract until  September 15th! 
Submit and become part of the ESSB community!
#spatialbiology #ESSB


Florian Wünnemann reposted

Watch the talk from Joseph Rich, grad student in @lpachter's lab, from BioC2024 timestamp ~12:30 youtu.be/T6cOyKHlxpE?si…

strnr's tweet card. Short Talks 3, Day 2

youtube.com

YouTube

Short Talks 3, Day 2

The impact of package selection and versioning on single-cell RNA-seq analysis biorxiv.org/cgi/content/sh… #biorxiv_bioinfo



Processing raw data using efficient, scalable @nextflowio pipelines and then performing interactive data analysis is a common use case for scientists! @SeqeraLabs Data studios brings the tools you love next to your data in the cloud 🤩☁️.

Interactive analysis is considered one of the most challenging bioinformatics steps. 💡Seqera's #DataStudios makes this easier by bringing reproducible, containerized and interactive analytical notebook environments to your data in real-time. 👉Dive in: seqera.io/blog/data-stud…



Florian Wünnemann reposted

I find it really interesting that biotechs & institutes often build their own bioinformatics workflow managers: - Insitro: Redun - GRAIL: Reflow - 10X Genomics: Martian - Invitae: in-house engine - CZI: Swipe - Broad: Cromwell - UCSC: Toil What does the future look like?


Florian Wünnemann reposted

Nextflow Jobs🤩. Do you know of a #job opportunity where #Nextflow skills are valued? Let me know 🙏

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities



What an amazing conference! Congrats to the organizers for doing an amazing job of putting this event together. It was awesome to meet so many amazing people, discuss their work and how @nextflowio can help make their research reproducible and scalable!

💥The Seqera team had an unforgettable week at #ISMB2024 & #BOSC2024 in Montreal 🇨🇦 Connecting with @nextflowio enthusiasts and the @nf_core community was thrilling! We hosted a raffle showcasing Nextflow pipelines - congrats to @reinisjiri, winner of the Airpods raffle!🎧⬇️

SeqeraLabs's tweet image. 💥The Seqera team had an unforgettable week at #ISMB2024 & #BOSC2024 in Montreal 🇨🇦 Connecting with @nextflowio enthusiasts and the @nf_core community was thrilling! 

We hosted a raffle showcasing Nextflow pipelines - congrats to @reinisjiri, winner of the Airpods raffle!🎧⬇️
SeqeraLabs's tweet image. 💥The Seqera team had an unforgettable week at #ISMB2024 & #BOSC2024 in Montreal 🇨🇦 Connecting with @nextflowio enthusiasts and the @nf_core community was thrilling! 

We hosted a raffle showcasing Nextflow pipelines - congrats to @reinisjiri, winner of the Airpods raffle!🎧⬇️
SeqeraLabs's tweet image. 💥The Seqera team had an unforgettable week at #ISMB2024 & #BOSC2024 in Montreal 🇨🇦 Connecting with @nextflowio enthusiasts and the @nf_core community was thrilling! 

We hosted a raffle showcasing Nextflow pipelines - congrats to @reinisjiri, winner of the Airpods raffle!🎧⬇️
SeqeraLabs's tweet image. 💥The Seqera team had an unforgettable week at #ISMB2024 & #BOSC2024 in Montreal 🇨🇦 Connecting with @nextflowio enthusiasts and the @nf_core community was thrilling! 

We hosted a raffle showcasing Nextflow pipelines - congrats to @reinisjiri, winner of the Airpods raffle!🎧⬇️


If you are in Montreal at #ISMB2024 or #BOSC2024 find us at Table #15 to talk all things #Nextflow and @SeqeraLabs ! Excited to see you there 🤩!

✨It's happening! #ISMB2024 begins this weekend while #BOSC2024 kicks off on Monday. Tomorrow, stop by Seqera's table #15 to participate in our #Nextflow pipeline raffle for a chance to win a special pair of AirPods!🎧 You can also grab never-before-seen @nextflowio stickers👀

SeqeraLabs's tweet image. ✨It's happening! #ISMB2024 begins this weekend while #BOSC2024 kicks off on Monday. 

Tomorrow, stop by Seqera's table #15 to participate in our #Nextflow pipeline raffle for a chance to win a special pair of AirPods!🎧 You can also grab never-before-seen @nextflowio stickers👀


Florian Wünnemann reposted

🚀 Big news in Nextflow! The latest 24.04 release is packed with genuinely groundbreaking features and enhancements that transform your pipelines. From job arrays to new resource limits and Seqera Containers, new "topic channels" and a workflow output definition (adios…


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