#nextflow search results
SPARKI: a tool for the statistical analysis of pathogen identification results academic.oup.com/bioinformatics… 🧬🖥️🧪 #Rstats code: github.com/team113sanger/… #Nextflow workflow: github.com/team113sanger/…
🚀 Kickstart your #Nextflow journey on Nov 17-21 at Nextflow Training Week! Work through one of the courses on the #Nextflow training portal using a GitHub Codespaces training environment pre-loaded with all software, code & example data. Register here: hubs.la/Q03RZwQS0
Seqera Sessions Durham is just around the corner!🚀 Join us next week on November 13 for a day of hands-on learning and discovery in the heart of North Carolina’s Research Triangle. Start your morning with a free beginner #Nextflow training, then stick around for an afternoon of…
Improving the Reliability, Quality and Maintainability of Bioinformatics Pipelines with nf-test. #NextFlow #Unitest #CodeTesting #Bioinformatics #Pipelines @GigaScience academic.oup.com/gigascience/ad…
Nextpie: A web-based reporting tool and database for reproducible #Nextflow pipelines academic.oup.com/bioinformatics… 🧬🖥️🧪 github.com/bishwaG/Nextpie
🇫🇷 Seqera Sessions Paris is happening in just 2 weeks time!⌛ Join us for a morning of #Nextflow training, followed by an afternoon of expert talks from: 🔹 Cameron MacPherson from @Roche 🔹 Simone Pignotti and Jan Havránek from @EligoBio 🔹 @EvanFloden from @SeqeraLabs 📍 Join…
Running with data on AWS s3? Update to the latest version of @nextflow.io (25.10) and get some performance improvements for free 🤩 This kind of "under the hood" work can often go unnoticed, but this is what makes #Nextflow capable of powering huge analysis workflows 💪🏻
💡 Nextflow 25.10 brings a significant performance boost to pipelines running on Amazon S3, both at the level of basic S3 operations and end-to-end workflow runs. 📊 Check out the benchmark comparisons against Nextflow 25.04! hubs.la/Q03RNkQd0
NEXT FLOW訪問看護ブースでは、YouTube登録をすると無料ガラポン抽選ができます。ペットボトルキャップ10g(約５つ分)持参でアクリルキーホルダーを進呈します。 集めたキャップは支援団体を通じて、世界の子ども達へのワクチン支援に活用されます。 #vfk #NEXTFLOW #エヌフくん
💦 Smoothed-Particle Hydrodynamics (SPH) coming to Simcenter STAR-CCM+ 💦 The biggest #CFD splash for me in 2024 so far: blogs.sw.siemens.com/simcenter/sph-… A bit more than 2 years ago, Siemens acquired #Nextflow Software…
Results in diff expression analysis can vary depending on the processing pipeline used, but to what extent do they affect gene set enrichment?🤔 To answer this we present FLOP, a #nextflow workflow to perform & contrast RNA-seq results 🖥️ doi.org/10.1101/2023.0… 👇🧵
We are thrilled to announce the release of a new major version of the #Nextflow VSCode Extension! 🚀 The #Nextflow VSCode extension now offers a modern developer experience with: 🔹 Precise errors and warnings 🔹 Syntax highlighting and auto-formatting 🔹 Code navigation 🔹…
From Workflows to People 👭 Check out the latest blog post by Nextflow Ambassador Lara Ianov on building community through #Nextflow and @nf_core at @UABNews 👏 📚 Read now: hubs.la/Q03QVsqt0
FlexLMM: a #Nextflow linear mixed model framework for GWAS arxiv.org/abs/2410.01533 🧬🖥️ github.com/birneylab/flex…
I am presenting how @GHGA_DE standardize and optimize in-house somatic variant calling workflows using #nextflow. Find me tomorrow in front of P15.008.D #eshg2024 👋
Nextflow Training & Sessions | 🗓️ Nov 18, 2025 | 🇫🇷 Meliá Paris La Défense Join us in Paris next month for beginner-friendly #Nextflow Training, expert presentations, live demos, and networking. Speaker lineup dropping soon! 👀 Register here: hubs.la/Q03Prw7T0
Weekly Recap (Aug 2025, part 2): Metagenome assembly from nanopore reads, AI for single-cell analysis, GxE + epistasis in a vertebrate model, estimating GxE for polygenic traits, long-read alignment, agents, nf-core, ... doi.org/10.59350/004y6… #Rstats #nextflow 🧬🖥️🧪
Already 2.nd day at @nf_core #nextflow hackathon crashing some modules and pipelines. Happy to be part of this amazing @GHGA_DE workflows team. @zhrhzl Florian Heyl
Comprehensive multi-omics profiling of a healthy human cohort biorxiv.org/content/10.110… #Nextflow workflow: github.com/EATRIS/EATRIS-…
Seqera Sessions Durham is just around the corner!🚀 Join us next week on November 13 for a day of hands-on learning and discovery in the heart of North Carolina’s Research Triangle. Start your morning with a free beginner #Nextflow training, then stick around for an afternoon of…
🚀 Kickstart your #Nextflow journey on Nov 17-21 at Nextflow Training Week! Work through one of the courses on the #Nextflow training portal using a GitHub Codespaces training environment pre-loaded with all software, code & example data. Register here: hubs.la/Q03RZwQS0
Just found out #Nextflow supports job arrays 😅 Add `array <integer>` inside the `process { ... }` block, and it fixes “You have reached the rate limit of jobs submitted per hour” error.
Running with data on AWS s3? Update to the latest version of @nextflow.io (25.10) and get some performance improvements for free 🤩 This kind of "under the hood" work can often go unnoticed, but this is what makes #Nextflow capable of powering huge analysis workflows 💪🏻
💡 Nextflow 25.10 brings a significant performance boost to pipelines running on Amazon S3, both at the level of basic S3 operations and end-to-end workflow runs. 📊 Check out the benchmark comparisons against Nextflow 25.04! hubs.la/Q03RNkQd0
SPARKI: a tool for the statistical analysis of pathogen identification results academic.oup.com/bioinformatics… 🧬🖥️🧪 #Rstats code: github.com/team113sanger/… #Nextflow workflow: github.com/team113sanger/…
🇫🇷 Seqera Sessions Paris is happening in just 2 weeks time!⌛ Join us for a morning of #Nextflow training, followed by an afternoon of expert talks from: 🔹 Cameron MacPherson from @Roche 🔹 Simone Pignotti and Jan Havránek from @EligoBio 🔹 @EvanFloden from @SeqeraLabs 📍 Join…
From Workflows to People 👭 Check out the latest blog post by Nextflow Ambassador Lara Ianov on building community through #Nextflow and @nf_core at @UABNews 👏 📚 Read now: hubs.la/Q03QVsqt0
Great to see the bioimaging community embracing #Nextflow. Looking forward to seeing these skills put into practice!
If you missed out on #Nextflow training, check out these sessions from @SeqeraLabs coming up ⬇️
Improving the Reliability, Quality and Maintainability of Bioinformatics Pipelines with nf-test. #NextFlow #Unitest #CodeTesting #Bioinformatics #Pipelines @GigaScience academic.oup.com/gigascience/ad…
🚀 Introducing the Nextflow Plugins Registry: a centralized repository for discovering, sharing, and managing #Nextflow plugins. We've streamlined the entire plugin lifecycle for the bioinformatics community.💻 Explore today: hubs.la/Q03Q09v-0
Day 2 of the #NextflowSummit is underway! Up first: a must-see keynote from Ben Sherman (@SeqeraLabs) on everything new with #Nextflow, followed by 3 parallel talk tracks: 🤖 AI-Assisted Research 💊 Translational Research 🌎 Nextflow Ecosystem & @nf_core
Nextpie is a web application that aggregates and visualizes metadata from #Nextflow pipeline runs. It collects resource usage information—CPU, memory, and disk utilization—into a centralized database, offering interactive visualizations and API-based access for performance…
ICYMI: Considering, "Which workflow manager should I use?" We've compared the major players: 🐍 #Snakemake 🌊 #Nextflow 📜 #CWL / #WDL 🌌 #Galaxy 🤖 #Snakemaker 🔗: bridgeinformatics.com/battle-of-the-… #Bioinformatics #DataScience #Genomics #Workflows #Reproducibility #AI
Get ready for: 🔹 Product updates from #Nextflow and #Seqera 🔹 Presentations from industry leaders across 6 specialized tracks 🔹 Lightning poster sessions showcasing cutting-edge research
Nextflow Training & Sessions | 🗓️ Nov 18, 2025 | 🇫🇷 Meliá Paris La Défense Join us in Paris next month for beginner-friendly #Nextflow Training, expert presentations, live demos, and networking. Speaker lineup dropping soon! 👀 Register here: hubs.la/Q03Prw7T0
🔵#横浜FC名古屋 ブース情報🔵 #NEXTFLOW 無料抽選会開催🎁 #フリ丸 と #エヌフ のコラボグッズが当たる！ ペットボトルキャップ回収も⭐️ リサイクル支援団体を通じて、世界の子どもたちへのワクチン支援に活用✨ぜひお持ち下さい🙌 ⏱11:00〜キックオフ 📍ホームゴール裏イベント広場 #yokohamafc
#NEXTFLOW さんの抽選会！ ノートとステッカーいただいてきました～🎵 #yokohamafc 🆚 #grampus
#横浜FC #yokohamafc #フリ丸 #NEXTFLOW訪問看護 #看護師 横浜FC フリ丸が NEXT FLOWの訪問看護を体験👩🏻⚕️👨🏻⚕️🏠 訪問看護や介護を知らない方へ フリ丸とエヌフが一緒にお届けします！ ぜひご覧ください！ youtu.be/YNXKvdpBFKs?si…
#NEXTFLOW さんにお邪魔してきましたっ(● ˃̶͈̀ロ˂̶͈́)੭ꠥ⁾⁾ 足を洗ってもらったり、車椅子を体験したり、訪問看護を勉強してきましたっ(● ˃̶͈̀ロ˂̶͈́)੭ꠥ⁾⁾ ぜひ皆さんも試合にお越しいただく道中にゴシチョーくださいっ(● ˃̶͈̀ロ˂̶͈́)੭ꠥ⁾⁾ #yokohamafc
#横浜FC #yokohamafc #フリ丸 #NEXTFLOW訪問看護 #看護師 横浜FC フリ丸が NEXT FLOWの訪問看護を体験👩🏻⚕️👨🏻⚕️🏠 訪問看護や介護を知らない方へ フリ丸とエヌフが一緒にお届けします！ ぜひご覧ください！ youtu.be/YNXKvdpBFKs?si…
Improving the Reliability, Quality and Maintainability of Bioinformatics Pipelines with nf-test. #NextFlow #Unitest #CodeTesting #Bioinformatics #Pipelines @GigaScience academic.oup.com/gigascience/ad…
Weekly Recap (Aug 2025, part 2): Metagenome assembly from nanopore reads, AI for single-cell analysis, GxE + epistasis in a vertebrate model, estimating GxE for polygenic traits, long-read alignment, agents, nf-core, ... doi.org/10.59350/004y6… #Rstats #nextflow 🧬🖥️🧪
Nextpie: A web-based reporting tool and database for reproducible #Nextflow pipelines academic.oup.com/bioinformatics… 🧬🖥️🧪 github.com/bishwaG/Nextpie
FlexLMM: a #Nextflow linear mixed model framework for GWAS arxiv.org/abs/2410.01533 🧬🖥️ github.com/birneylab/flex…
Comprehensive multi-omics profiling of a healthy human cohort biorxiv.org/content/10.110… #Nextflow workflow: github.com/EATRIS/EATRIS-…
Results in diff expression analysis can vary depending on the processing pipeline used, but to what extent do they affect gene set enrichment?🤔 To answer this we present FLOP, a #nextflow workflow to perform & contrast RNA-seq results 🖥️ doi.org/10.1101/2023.0… 👇🧵
#Nextflow pipeline for #RNA Seq Read Count youtu.be/78YDqvg2ADA #Bioinformatics #BigData #DataScience #DataAnalytics
Cloudgene 3 (cloudgene.io): Transforming #Nextflow Pipelines into Powerful Web Services biorxiv.org/content/10.110…
SPARKI: a tool for the statistical analysis of pathogen identification results academic.oup.com/bioinformatics… 🧬🖥️🧪 #Rstats code: github.com/team113sanger/… #Nextflow workflow: github.com/team113sanger/…
Good first impressions with Positron. RStudio-like plot/file/environment explorer for #Rstats, Jupyter-like Python support, while simultaneously editing a Dockerfile and #Nextflow script github.com/posit-dev/posi…
Via @TienAtSeqera 😎 Join the vibrant @nextflowio and @nf_core communities 🥳 #Nextflow #openscience #workflow #reproducibility #nfcore
Hi Friends, Here is a #Nextflow Tutorial on #Genome Annotation using #PROKKA youtu.be/76PAhyMh-3o #Bioinformatics #DataScience #BigData #Bacteria
Metagenomics-Toolkit: The Flexible and Efficient Cloud-Based Metagenomics Workflow featuring Machine Learning-Enabled Resource Allocation biorxiv.org/content/10.110… 🧬🖥️🧪 #nextflow github.com/metagenomics/m…
Empowering bioinformatics communities with Nextflow and nf-core. #nfCore #Nextflow #FAIR #Bioinformatics @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…
A Bionformatics Tutorial on Nextflow for RNA Seq Read Count Estimation youtu.be/78YDqvg2ADA #Bionformatics #BigData #Nextflow #RNA #Seq
#Nextflow Scripting for #Bioinformatics is very easy. Here is a tutorial that shows you how write a script to assemble oxford #nanopore data with flye. youtu.be/XejGiuAi7ek #Bioinformatics #DataScience #BigData #Linux #ONT
bcRflow: a #Nextflow pipeline for characterizing B cell receptor repertoires from non-targeted transcriptomic data academic.oup.com/nargab/article… 🧬🖥️ github.com/Bioinformatics…
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