geesthc's profile picture. Bioinformatician @ HudsonRiverBiotechnology, Netherlands 
Believer of genetically edited plants for a better world.
Husband,2 daughters; Christian #KerkvoorNU

Henri van de Geest

@geesthc

Bioinformatician @ HudsonRiverBiotechnology, Netherlands Believer of genetically edited plants for a better world. Husband,2 daughters; Christian #KerkvoorNU

What an era was this... We moved on, but hey, many, many warm memories with Canu! github.com/marbl/canu/rel… Goodbye. Do not expect another release. This is it, folks. The sequencing technology has moved on and Canu is all but obsolete now.


Just tried the dorado v0.7.0 version, the basecalling quality gets a very nice jump! Not a minor increase, this is huge! (mode Q20 -> Q23) Any timeline prediction for minknow integration? data: ~1kb PCR amplicon, plant, plot made with Giraffe @nanopore @iiSeymour

geesthc's tweet image. Just tried the dorado v0.7.0 version, the basecalling quality gets a very nice jump! Not a minor increase, this is huge! (mode Q20 -> Q23) Any timeline prediction for minknow integration?
data: ~1kb PCR amplicon, plant, plot made with Giraffe
@nanopore @iiSeymour

Huge set of software releases for @nanopore #DataAfterDark starting with dorado v0.7.0. More accurate v5 simplex models for DNA, RNA and duplex, 4mC calling, q40 read correction, Poly(A) tail est for plasmids and transcripts with interrupted tails, plus more 🤯 #nanoporeconf



Shiny apples they have here! At Hudson River Biotechnology we are using ONT sequencing to detect our CRISPR based gene edits in many different crops. What about a better shelf life? Nanopore seq brings us further everyday! @HudsonRiverBio1 #nanoporeconf hrb.bio

geesthc's tweet image. Shiny apples they have here! At Hudson River Biotechnology we are using ONT sequencing to detect our CRISPR based gene edits in many different crops. What about a better shelf life? Nanopore seq brings us further everyday! @HudsonRiverBio1 #nanoporeconf hrb.bio

Henri van de Geest reposted

Now, @nanopore only approaches are producing the best t2t automated assemblies ever produced with 30 contigs and 5 scaffolds! 🤯🤯🤯🤯 #nanoporeconf

iiSeymour's tweet image. Now, @nanopore only approaches are producing the best t2t automated assemblies ever produced with 30 contigs and 5 scaffolds! 🤯🤯🤯🤯 #nanoporeconf

Henri van de Geest reposted

This is wild. OpenAI just dropped ChatGPT-4o and it will completely change the AI assistant game. 10 wild examples: 1. Visual assistant in real-time

From OpenAI

#noorderlicht opeens heb je geluk, met het blote oog heel goed te zien. Het licht bewoog zelfs. Vanuit Duiven!

geesthc's tweet image. #noorderlicht opeens heb je geluk, met het blote oog heel goed te zien. Het licht bewoog zelfs. Vanuit Duiven!
geesthc's tweet image. #noorderlicht opeens heb je geluk, met het blote oog heel goed te zien. Het licht bewoog zelfs. Vanuit Duiven!

Looking forward to LC24, Train and Airbnb booked! #LC24 @nanopore


Henri van de Geest reposted
drimran_farooq's tweet image. R.I.P. scientific publishing and peer-review system. 

sciencedirect.com/science/articl…

#AcademicTwitter #academic #academia #researchers #research #phd @PhDVoice @PhD_Genie
drimran_farooq's tweet image. R.I.P. scientific publishing and peer-review system. 

sciencedirect.com/science/articl…

#AcademicTwitter #academic #academia #researchers #research #phd @PhDVoice @PhD_Genie

Henri van de Geest reposted

RT: Grain Club 👨‍🎓🧬🌾🔬🧩📈🧑‍🌾💚 Historic moment: @Europarl_EN votes FOR proposal @EU_Commission for the future regulation & application of new genomic techniques #NGT #CRISPR Good decision for #agriculture #CRISPRforEurope #EUFarm2Fork #Genomics #plantbreeding #FoodSecurity

CzemborH's tweet image. RT: Grain Club 
👨‍🎓🧬🌾🔬🧩📈🧑‍🌾💚
Historic moment: @Europarl_EN  votes FOR proposal @EU_Commission  for the future regulation & application of new genomic techniques #NGT 
#CRISPR 
Good decision for #agriculture 
#CRISPRforEurope #EUFarm2Fork
#Genomics #plantbreeding #FoodSecurity

Henri van de Geest reposted

#AGBT24: Who are N26Tec? “This new method will revolutionize NGS sample prep workflow universally across virtually all assays.  The simplicity and innovation will drastically improve workflow efficiency and data quality”


What is wrong with gpt4!? It constantly gives me flawed coding solutions, just like gpt3.5. Simple questions like basic dna operations cannot be translated into an awk solution. Every solution seems different, and not always right :( #justgotusedtoAI #ChatGPT4


Henri van de Geest reposted

Interested in LLMs for genomic research but don't know where to start? looking for a review/survey to get started in this field? 👇👇😀 I am very excited to share that our review paper titled "To Transformers and Beyond: Large Language Models for the Genome" is now available as…

BoWang87's tweet image. Interested in LLMs for genomic research but don't know where to start? looking for a review/survey to get started in this field?  👇👇😀

I am very excited to share that our review paper titled "To Transformers and Beyond: Large Language Models for the Genome" is now available as…
BoWang87's tweet image. Interested in LLMs for genomic research but don't know where to start? looking for a review/survey to get started in this field?  👇👇😀

I am very excited to share that our review paper titled "To Transformers and Beyond: Large Language Models for the Genome" is now available as…
BoWang87's tweet image. Interested in LLMs for genomic research but don't know where to start? looking for a review/survey to get started in this field?  👇👇😀

I am very excited to share that our review paper titled "To Transformers and Beyond: Large Language Models for the Genome" is now available as…

Henri van de Geest reposted

Effect of smoking on your lungs 🚬 ‼️


We recieved 2 batches of 6 flongles, an guess what, all 12 are above warranty level! Ranging from 52 to 100 pores. Great HQ production @nanopore! Ready for more amplicon sequencing on a <100,- euro flowcell :) @HudsonRiverBio1


Henri van de Geest reposted

New Resource: "A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology" rdcu.be/dl2Im With Research Briefing: "Reference genome and epigenome of the model and biofactory plant Nicotiana benthamiana" rdcu.be/dl2IH

NaturePlants's tweet image. New Resource: &quot;A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology&quot; rdcu.be/dl2Im

With Research Briefing: &quot;Reference genome and epigenome of the model and biofactory plant Nicotiana benthamiana&quot; rdcu.be/dl2IH

#stomprocket on campsite, so much fun. In the dark even better!

geesthc's tweet image. #stomprocket on campsite, so much fun. In the dark even better!

Loading...

Something went wrong.


Something went wrong.