LinkML - Linked (Open) Data Modeling Language
@linkml_data
A simple but expressive YAML-based data modeling language for effortlessly adding semantics to your data. https://fosstodon.org/@linkml
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The latest LinkML release, with added N-dimensional array support! github.com/linkml/linkml/…
![linkml_data's tweet card. Highlights [pydanticgen] Add list of lists array implementation by @rly @sneakers-the-rat in #1887 This release sees the first implementation of the array spec in pydanticgen. An overview of arr...](https://pbs.twimg.com/card_img/1988661272943161345/CRifNqgN?format=jpg&name=orig)
You can now find us over on fosstodon.org/@linkml!
The video of Sierra Moxon's ISCBacademy webinar (LinkML: an open data modeling framework, grounded with ontologies) is now up at youtube.com/watch?v=nyNp09… and the slides are at docs.google.com/presentation/d…
🙌Closer to bridging the gap between #biodiversity #omics data standards! 🆕Methods paper - part of the @Bicikl_H2020 collection - reports on building sustainable #interoperability between @tdwg's Darwin Core and MIxS. Find more: blog.pensoft.net/2023/10/04/adv… #GEOBONconf2023 #TDWG2023
The next LinkML Community meeting is tomorrow, Thursday, Sept 14 (the second Thursday of the month, rather than the usual third Thursday) at 8am PT / 11am ET / 15:00 UTC. Agenda: bit.ly/linkml-communi… Host: Chris Mungall Topic: Overview of the milestones and onboarding process
If you’re curious about how LinkML can help you create better, FAIRer, more reusable data models using ontologies, please check out our new article in the OBOOK: oboacademy.github.io/obook/lesson/l…
Take (thread) I think it is necessary to have #typelevel (schema) #datalineage across tech, languages, ML workflows ("data pipelines") + bring closer #dataengineering and #datagovernance in order to realize #ResponsibleAI And #LinkML is uniquely suited
A #SemanticLayer needs a data schema language that can 1. subsume existing schema languages: json, avro, etc 2. abstract over data formats (delay conversions) 3. use a generative approach towards existing schema dialects, #GPL-s & frameworks linkml.io/linkml/faq/why… #SmartData
LinkML github.com/linkml is a great eco-system. Did some experimenting with multiple data model paradigms and dito data serialisations with the same semantics. LinkML is built with itself! @oeg_upm @semanticbeeng @mijaspao @kvistgaard @linkml_data What do you think?
A #SemanticLayer needs a data schema language that can 1. subsume existing schema languages: json, avro, etc 2. abstract over data formats (delay conversions) 3. use a generative approach towards existing schema dialects, #GPL-s & frameworks linkml.io/linkml/faq/why… #SmartData
"Data is self-describing and does not rely on an application for interpretation and meaning." With @linkml_data we can have data stay in efficient data formats and "eat the semantic cake too" (on demand; keen conversion to RDF makes silos) #SmartData
A #SemanticLayer needs a data schema language that can 1. subsume existing schema languages: json, avro, etc 2. abstract over data formats (delay conversions) 3. use a generative approach towards existing schema dialects, #GPL-s & frameworks linkml.io/linkml/faq/why… #SmartData
We added a howto guide to the @linkml_data docs on generating AI prompts from LinkML schemas. linkml.io/linkml/howtos/…, making use of the new feature in the @OpenAI API to structure results as JSON platform.openai.com/docs/guides/gp… 🧵
The next #LinkML community meeting is on June 15 at 11am ET. James Overton will present Nanobot (web UI) + VALVE (table/database/validation layer). Agenda: bit.ly/linkml-communi…
github.com/monarch-initia… will be of interest to folks using RDF who aren’t allergic to LLMs
The OntoGPT framework and SPIRES tool by @chrismungall 's team provide a principled approach to extract knowledge graph from unstructured text using GPT. Here is my impression. apex974.com/articles/ontog…
Great article on applying the LinkML-powered #OntoGPT framework!
The OntoGPT framework and SPIRES tool by @chrismungall 's team provide a principled approach to extract knowledge graph from unstructured text using GPT. Here is my impression. apex974.com/articles/ontog…
#LinkML and #SodaCL could be combined to specify #DataContract-s with a semantic layer, in a technology agnostic way 🤔 linkml.io/linkml/intro/o…… docs.soda.io/soda-cl/metric…… cc cc @linkml_data @Onehousehq @datahubproject #SmartData
The @MonarchInit Biolink Model Brings Data Together! Find out more about our top 3 most downloaded papers in 2022 from the journal ASCPT here: ascpt.org/Journals/CTS/T… #BiolinkModel #TeamScience #Collaboration #RareDisease #DrugRepurposing #TranslationalScience @linkml_data
LinkML community meeting on May 18 at 11am ET! Please join us to hear about schema-driven data collection tools like CEDAR (John Graybeal, @jgmetadata) & DataHarmonizer (Damion Dooley, @synapticlove). Agenda: bit.ly/linkml-communi… #LinkML #TeamScience #Collaboration #DataModel
Have a LinkML feature request? Interested in tutorials? Eager to share your LinkML model or use case with the community? Join our next monthly community meeting on April 20 at 11am ET. Subscribe to groups.google.com/g/linkml-commu… for meeting info! #LinkML #TeamScience #DataModel
Interesting use of GPT to build structured knowledge bases from unstructured text using Large Language Models. @chrismungall et al monarchinit.medium.com/spires-buildin…
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