Matthias Scholz
@panphlan
Senior Researcher in Bioinformatics | strain-level metagenomics | gut microbiome & human health | Wolbachia bacterial evolution
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Wolbachia evolution and how the bacterial infection spread across the world of insects: Results of our large collection of hundreds of reconstructed Wolbachia genomes are published today in Nature Communications nature.com/articles/s4146…
Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation. #eDNA #ShotgunSequencing #PopulationGenetics #GenomicVariation #Genomics #Bioinformatics @NatureEcoEvo nature.com/articles/s4155…
A great opinion paper tackling the common misconceptions of speciation research. Speciation is the evolutionary process by which populations evolve to become distinct species. Open-access - academic.oup.com/evolinnean/art… 𝗧𝗶𝘁𝗹𝗲 Common misconceptions of speciation
How much functional redundancy exists in microbial communities? And what key functions are redundantly provided to support a healthier gut microbiome? Happy to meet and exchange ideas at the Evolutionary Biology Congress #SIBE2024, Naples! See you there! sibe-iseb.it/napoli2024
A computational tour de force by the researchers @cibiocm showed how the gut and oral #microbiome is transmitted from person to person showing that #cohabitation is more important than #kinship. And this is true across continents. My latest @NatureItaly nature.com/articles/d4397…
Bakta is a worthy successor to Prokka, which has been neglected in recent years. Bakta is being actively developed with new features that Prokka never had, so I encourage Prokka users to try it out!
🦠🧬🖥️ We've released v1.5.0 of Bakta along with a huge DB update! New features: - detection of pseudogenes - assignments of KEGG Orthology accessions - addition of 9.8 million E.C. numbers to PSCs github.com/oschwengers/ba… More information below 👇 (1/7)
PanPhlAn based functional strain diversity analysis of Fusobacterium nucleatum in "Meta-Analysis of Altered Gut Microbiota Reveals Microbial and Metabolic Biomarkers for Colorectal Cancer" journals.asm.org/doi/10.1128/sp…
Multiple long-range host shifts of major Wolbachia supergroups infecting arthropods nature.com/articles/s4159…
Subgroup of Prevotella copri strains showing a potential antiviral protective role: "HIV-linked gut dysbiosis associates with cytokine production capacity in viral-suppressed people living with HIV" biorxiv.org/content/10.110…
Abstract submission deadline April 22nd. Looking forward to the Evolutionary Biology meeting #ESEB2022 in Prague, 14-19 August.
The Dutch Microbiome Project paper is out now in @Nature! Do you want to know more about #microbiome and health? Here is a thread with our main findings 🧵⬇️ nature.com/articles/s4158…
Many strains of C. acnes are all over the skin of your face but each pore contains only ONE strain. Each strain gets comfy in its pore so it doesn't have to compete with other strains. An example of spatial structure shaping the microbial community. cell.com/cell-host-micr…
To what extent do we carry our mum’s microbiome? And our great-grandma’s? In our latest study @NatureMicrobiol, we assess how the gut microbiome is transmitted across familial generations. nature.com/articles/s4156… Thread 🧵👇
"Towards the biogeography of prokaryotic genes" is finally out at @Nature We wanted to know what genes are out there and how they are distributed around the world A 🧵 on the main findings nature.com/articles/s4158… 1/18
bioBakery 3 is out in @eLife! It describes our latest versions of MetaPhlAn 3, HUMAnN 3, StrainPhlAn 3, PanPhlAn 3 and more from @cibiocm and @hutlab ! Huge thanks to so many but especially to Francesco Beghini @chocophlan and Lauren McIver! elifesciences.org/articles/65088
Our paper is out on the link between the placque microbiome and peri-implantitis. nature.com/articles/s4152… Fantastic job Paolo Ghensi & Paolo Manghi @paolo_manghi . Thanks so much also to @Azufre451 @mattiabolzan @epasolli @CristianoTomas1 and the other dentists and collaborators!
Large scale analysis (over 1000 genomes!) leads to cool results. 😎 We wholeheartedly agree with this understatement from the abstract: “Wolbachia is an iconic example of a successful intracellular bacterium.” That’s why it’s our favorite to study!
Our analysis of 1000 Wolbachia genomes with @cibiocm @panphlan @fondazionemach is out. We found no support for synchronous divergence between Wolbachia and host mitochondria. Drosophila-Wolbachia dynamics seems to be the exception rather than the norm. nature.com/articles/s4146…
Our analysis of 1000 Wolbachia genomes with @cibiocm @panphlan @fondazionemach is out. We found no support for synchronous divergence between Wolbachia and host mitochondria. Drosophila-Wolbachia dynamics seems to be the exception rather than the norm. nature.com/articles/s4146…
Free access to our cheese microbiome paper is available through the Springer Nature Content Shsring initiative SharedIt rdcu.be/b6fbI @aaronbreathnach @guerrinomacori @teagasc @TeagascFood @VistaMilk @fhi_tweets @MASTER_IA_H2020 @SeqBiome 1/2
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