scalable minds
@scalableminds
We build tools and services for large-scale neuroscience. @webknossos
You might like
Storing, sharing, visualizing and processing large #volumeEM data can be challenging. Selecting the right file format is the basis for making things easier. Our article „Toward scalable reuse of vEM data: OME-Zarr to the rescue“ is out now: authors.elsevier.com/a/1gjIc,25QIop… 🧵1/5
Major publication by our friends at @mh_lab @MpiBrain! We used our Voxelytics software to help with fully automatic neuron segmentation, synapse detection, and connectome generation for 9 EM datasets from Mouse, Macaque, and Human. All datasets are available at @webknossos.
Dataset showcase ✨ Connectomic comparison of mouse and human cortex by @sahil_loomba @mh_lab @MpiBrain et al. All datasets from Human, Macaque and Mouse available at webknossos.org/publication/62…
@PyConDE was awsome! Big thanks to all the amazing organisers, volunteers & speakers! #PyConDE #PyDataBerlin
Going to present speedup steps that made data analysis code 700% faster, today at 2PM, #PyConDE 2022.pycon.de/program/VYS8XY Big thanks to my amazing colleagues at @scalableminds for the help and feedback preparing it 🙏
2022.pycon.de
5 Steps to Speed Up Your Data-Analysis on a Single Core @jostriebel #PyConDE #PyDataBerlin #PyData
Your data analysis pipeline works. Nice. Could it be faster? Probably. Do you need to parallelize? Not yet. Discover optimization steps that boost the performance of your data analysis pipeline on a...
Find a soma, select the skeleton annotation tool, move between the slices of your data and place nodes until your neurite ends... Learn everything about skeleton annotations in webKnossos in @tom_herold 's blog post! medium.com/scalableminds/… #Connectome #BioImageAnalysis
There are now (at least) 4 companies offering neural circuit reconstruction as a service: Zetta AI, Ariadne AI, Scalable Minds, and Unidesign Solutions. I think all require you to bring your own EM data, but I'm sure we'll see sample prep and image acquisition as a service soon.
Read our blogpost about Machine learning workflows for large-scale reconstruction projects and discover how to make the most out of webKnossos for such use cases! medium.com/scalableminds/… #MachineLearning #Connectome
Do you need ground truth for your deep learning project? Check out our manual annotation service. Get high-quality annotations from our trained annotators for your image data. Learn more: webknossos.org/services/annot…
Read @normanrz 's blogpost to learn everything you need about meshes in webKnossos! medium.com/scalableminds/…
Render your meshes with your favorite tool. Choose a loaded mesh in the "Meshes" tab, then download it in STL. Import it into your rendering software (such as Blender or Amira) and let your graphic skills shine! Read more: medium.com/scalableminds/…
webKnossos now supports precomputed meshes. Click on a segment and instantly view the object in 3D. Try a demo: webknossos.org/datasets/scala…
We're introducing a dark mode to webKnossos! 🌙 Take it easy on your eyes when working those late hours or in dark environments or simply enjoy its aesthetic.
webKnossos now supports multisection tiffs and image sequences on upload. 🎉 Let us know what formats we should add next!
Read about new annotation and usability features in webKnossos in our latest blog post! medium.com/scalableminds/…
webknossos.org now features a site listing publications which used webKnossos in their work. Please contact us if we missed your publication! webknossos.org/references
We're introducing a pilot program for webKnossos. Receive up to 10TB of storage for free and help us shape the future of webKnossos. Apply now at webknossos.org/pilot-program
Big thanks to the super amazing team at @scalableminds for their help and support! :)
New publication with 10 novel datasets available on webknossos.org: "Postnatal connectomic development of inhibition in mouse barrel cortex" Published in @ScienceMagazine by @AnjaliGour18, @boergens, N Heike, Y Hua, P Laserstein, K Song, @mh_lab
New publication data on webknossos.org: "Electron Microscopic Reconstruction of Neural Circuitry in the Cochlea" (Cell Reports) by Hua et al. Published at @CellReports! Check it out now: wklink.org/9870
We are hosting many datasets on webknossos.org openly available - can browse on most mobile phones. Eg webknossos.org/datasets/Demo_… #webknossos @scalableminds
United States Trends
- 1. #GrabFoodMegaSalexหลิงออม 219K posts
- 2. Good Thursday 25.5K posts
- 3. SUSDT N/A
- 4. Happy Friday Eve N/A
- 5. Rejoice in the Lord 2,012 posts
- 6. PancakeSwap BNB Chain N/A
- 7. RIP Brooksie N/A
- 8. #WorldKindnessDay 7,949 posts
- 9. #thursdaymotivation 1,707 posts
- 10. #River 5,757 posts
- 11. #thursdayvibes 2,316 posts
- 12. Namjoon 95.7K posts
- 13. New Zealand 14.9K posts
- 14. Jokic 30.6K posts
- 15. Michael Burry 6,294 posts
- 16. Mikey 57.9K posts
- 17. Bill Clinton 42K posts
- 18. Horizon 28.9K posts
- 19. Rory 9,066 posts
- 20. Starship 19.6K posts
Something went wrong.
Something went wrong.