tomstantonmicro's profile picture. lead developer of #Kaptive + bonafide #Klebsiella nerd;
post-doc @AlfredMonash_ID | PhD @UoE_IM | BSAC+NGS @UKHSA;
triathlon + music production in another life

Tom Stanton

@tomstantonmicro

lead developer of #Kaptive + bonafide #Klebsiella nerd; post-doc @AlfredMonash_ID | PhD @UoE_IM | BSAC+NGS @UKHSA; triathlon + music production in another life

Tom Stanton reposted

How can we use genomics to help guide new vaccines and control strategies for #klebsiella? Check out this article to see how we are contributing- for me it's undoubtedly one of the most rewarding things we do! With @DrKatHolt @tomstantonmicro @theycallmemaggi + many others

Imagine carrying a baby to term only to lose it within four weeks to a severe bloodstream infection. Every year, 1 million newborns (est) die of neonatal sepsis. The most common cause is Klebsiella pneumoniae bacteria, which also afflict countless elderly and…

MonashSTM's tweet image. Imagine carrying a baby to term only to lose it within four weeks to a severe bloodstream infection. 

Every year,  1 million newborns (est) die of neonatal sepsis. 

The most common cause is Klebsiella pneumoniae bacteria, which also afflict countless elderly and…


Late to the party but I finally got Blue sky, follow me! bsky.app/profile/tomsta…


fyi, my alternate #KLEBS2024 flash talk slide #Klebsiella #Kaptive

tomstantonmicro's tweet image. fyi, my alternate #KLEBS2024 flash talk slide
#Klebsiella #Kaptive

Tom Stanton reposted

Here we go! #KLEBS2024 400 in person and 400 online participants from 71 countries.... Wow!

KelWyres's tweet image. Here we go! #KLEBS2024
400 in person and 400 online participants from 71 countries.... Wow!

Tom Stanton reposted

For those considering migrating to that better place, @KlebClub can ease your transition & help connect with the community. Leave us your 🔵🦋 handle and we’ll add you to the #Klebsiella starter pack. If u r going to #KLEBS2024 in Paris, we’ll have a QR code to join easily.


Tom Stanton reposted

1/ One of the most common mistakes in bioinformatics is the one-off error. If you are not careful, you will make mistakes. Even experienced bioinformaticians are not aware of it and the mistake prevails in many bioinformatics tools. A thread 🧵

tangming2005's tweet image. 1/ One of the most common mistakes in bioinformatics is the one-off error. If you are not careful, you will make mistakes. Even experienced bioinformaticians are not aware of it and the mistake prevails in many bioinformatics tools.  A thread 🧵

Tom Stanton reposted

Three weeks to go to get your abstracts in for MGE AUS - A meeting dedicated to Mobile Genetic Elements! - Student/ECR focused - Travel sponsorships available - Keynote speakers announced - Two day program coming soon Register today! mgeaus.org @AUSSOCMIC

MGE_AUS's tweet image. Three weeks to go to get your abstracts in for MGE AUS

- A meeting dedicated to Mobile Genetic Elements!
- Student/ECR focused 
- Travel sponsorships available 
- Keynote speakers announced 
- Two day program coming soon  

Register today!
mgeaus.org

@AUSSOCMIC

Tom Stanton reposted

A reminder to submit your abstracts for MGE AUS by November 29th - Student/ECR focused - Travel sponsorships available - Keynote speakers announced - Two day program coming soon - Early bird prices still available mgeaus.org @AUSSOCMIC

DrGalainW's tweet image. A reminder to submit your abstracts for MGE AUS by November 29th

- Student/ECR focused
- Travel sponsorships available
- Keynote speakers announced
- Two day program coming soon 
- Early bird prices still available

mgeaus.org
@AUSSOCMIC

Tom Stanton reposted

The exopolysaccharide Poly-N-Acetyl-Glucosamine (PNAG) coats Klebsiella pneumoniae in vivo dlvr.it/TDc8T5


Dear Kaptive-Web users, we are currently, migrating over to #Kaptive 3 (woo!); the server will be back up and running ASAP 🧑‍💻 In the mean time, head on over to our shiny new docs 👇 kaptive.readthedocs.io/en/latest/


Tom Stanton reposted

(1/6) Our new short preprint, led by @helena_bethanyy and myself on incidental bacterial domestication between patient isolation and creation of frozen stock. Geno/phenotype changes are obscured by rich media and more prevalent than we previously thought biorxiv.org/content/10.110…

bananabenana's tweet image. (1/6) Our new short preprint, led by @helena_bethanyy and myself on incidental bacterial domestication between patient isolation and creation of frozen stock. Geno/phenotype changes are obscured by rich media and more prevalent than we previously thought
biorxiv.org/content/10.110…

Tom Stanton reposted

Excited to share this preprint where we’ve used genomic analysis of >3000 genomes to study Klebsiella pneumoniae in a One Health perspective 🦠🔬👩‍💻#OneHealth #KLEBGAP #KlebClub @IrenLohr @DrKatHolt @NORKLEBNET

A genome-wide One Health study of Klebsiella pneumoniae in Norway reveals overlapping populations but few recent transmission events ... biorxiv.org/cgi/content/sh… #biorxiv_micrbio



Tom Stanton reposted

Really important data on determinants of hypervirulence in #klebsiella from Tom Russo and colleagues: tinyurl.com/5h9d457k Highlights complexity of the hv pathotype and shows the impact of aerobactin varies by strain. Check out our commentary below. @KlebClub

Comment from @KelWyres and myself on new experimental data (from Tom Russo and colleagues) and how we define #hypervirulent #Klebsiella pneumoniae genetically across diverse lineages. thelancet.com/journals/ebiom…



Comment from @KelWyres and myself on new experimental data (from Tom Russo and colleagues) and how we define #hypervirulent #Klebsiella pneumoniae genetically across diverse lineages. thelancet.com/journals/ebiom…


Tom Stanton reposted

@tomstantonmicro doing a fab job presenting Kaptive 3 for the first time, at #asm2024 Increased sensitivity ✅ Increased accuracy ✅ Increased speed ✅ You can check it out here: github.com/klebgenomics/K…


"Ah you think darkness is your ally? You merely adopted the dark. I was born in it..."

#KlebClub planning is back in session with our TWO NEW MEMBERS!!! Make sure to send a big congrats to Juan Valencia and @tomstantonmicro!!

KlebClub's tweet image. #KlebClub planning is back in session with our TWO NEW MEMBERS!!! Make sure to send a big congrats to Juan Valencia and @tomstantonmicro!!


Tom Stanton reposted

📢 Job Opportunity 📢 We are looking for a talented and driven Postdoctoral Research Fellow to join our team at @Griffith_Uni on the Gold Coast. If you're interested in advancing understanding of #Acinetobacterbaumannii capsules, see smrtr.io/mD9vc for more details!


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