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Vikas Yadav

@vy_vim

Vikas Yadav 님이 재게시함

The term PAMP (pathogen associated molecular pattern) is in the immunology lexicon. But what does pattern really mean? We need diverse ligands for a single receptor to decipher a pattern. LPS receptors, which detect non-LPS structures, may hold the key to answer this question.


Vikas Yadav 님이 재게시함

1/ A new series of #CryoSPARC tutorial videos from this year’s S2C2 #cryoEM image processing workshop are now online! These videos will be interesting to all users and especially those newer to #cryoEM. youtube.com/playlist?list=…


Vikas Yadav 님이 재게시함

today we are announcing reinforcement finetuning, which makes it really easy to create expert models in specific domains with very little training data. livestream going now: openai.com/12-days/ alpha program starting now, launching publicly in q1


Vikas Yadav 님이 재게시함

AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions | PNAS pnas.org/doi/10.1073/pn…


Vikas Yadav 님이 재게시함

There we go🤷. We have #alphafold3, @alexjamesnoble's VirtualIce, a plethora of (nearly) automated 3D reconstruction tools, #ModelAngelo... and AIs that can generate hypotheses, test them and write papers. #cryoEM can go home I guess.

In two new papers, researchers present AI agents that can do the entire job of a scientist – from hypothesis formulation, to literature research, data collection and analysis, all the way to writing a paper. youtube.com/watch?v=BXSuaY…

skdh's tweet card. This new “AI Scientist” can “fully automate discovery”, researchers...

youtube.com

YouTube

This new “AI Scientist” can “fully automate discovery”, researchers...



Vikas Yadav 님이 재게시함

Everything you wanted to know about the Big Three DNA Sensors: AIM2, cGAS, TLR9. Several suppritive characters also discussed. A must read authoritative review by Fitzgerald. @FitzgeraldKate nature.com/articles/s4159…


Vikas Yadav 님이 재게시함

Dear cryo-EM women scientists, We want to honor you and your contributions at BPS 2025. This year, the Cryo-EM subgroup will honor a mid/senior-career woman scientist as the inaugural June Almeida awardee. June Almeida is the virologist who first discovered the coronavirus in…

kellogg_liz's tweet image. Dear cryo-EM women scientists,

We want to honor you and your contributions at BPS 2025.
This year, the Cryo-EM subgroup will honor a mid/senior-career woman scientist as the inaugural June Almeida awardee. 
June Almeida is the virologist who first discovered the coronavirus in…

Vikas Yadav 님이 재게시함

Imagine if you woke up this morning and found that the NIH-funded database that holds all of the data that you and thousands of other scientists around the world consult every day was turned off. Gone. Despite many efforts by a community of scientists to lobby @NIH @NIHDirector

leslievosshall's tweet image. Imagine if you woke up this morning and found that the NIH-funded database that holds all of the data that you and thousands of other scientists around the world consult every day was turned off. Gone.
Despite many efforts by a community of scientists to lobby @NIH @NIHDirector…

Vikas Yadav 님이 재게시함
ScholarshipfPhd's tweet image.

Vikas Yadav 님이 재게시함

Main paper: rdcu.be/dHS5F OpenProteinSet paper: arxiv.org/abs/2308.05326 GitHub repo: github.com/aqlaboratory/o… OpenProteinSet AWS: registry.opendata.aws/openfold/ Now, as for AF3: Yes! :-)


Vikas Yadav 님이 재게시함

“PEP-Patch: Electrostatics in Protein-Protein Recognition, Specificity and Antibody Developability” A Python package for calculating electrostatic patches in antibodies biorxiv.org/content/10.110…

DdelAlamo's tweet image. “PEP-Patch: Electrostatics in Protein-Protein Recognition, Specificity and Antibody Developability”

A Python package for calculating electrostatic patches in antibodies

biorxiv.org/content/10.110…

Vikas Yadav 님이 재게시함

Interested in macromolecular interactions? Our new PISA-lite software generates more interaction data than ever, with detailed information on individual interfaces and atom-atom interactions. Data access is through PDBe API endpoints and JSON files. 🔗 ebi.ac.uk/pdbe/news/impr…

PDBeurope's tweet image. Interested in macromolecular interactions? Our new PISA-lite software generates more interaction data than ever, with detailed information on individual interfaces and atom-atom interactions. Data access is through PDBe API endpoints and JSON files.
🔗 ebi.ac.uk/pdbe/news/impr…

The fundamental importance of basic science nature.com/articles/d4158… This week's @Nature editorial

EricTopol's tweet image. The fundamental importance of basic science
nature.com/articles/d4158…
This week's @Nature editorial


Vikas Yadav 님이 재게시함

Check out our newest review on #cryoEM (of membrane proteins) at 200 keV. Take home message: don’t treat your 200keV TEM only as a screening machine 😉. Fantastic work by @chancie_t and @rheinbergerj 👇🏼 sciencedirect.com/science?_ob=Ga…

CPaulino_'s tweet image. Check out our newest review on #cryoEM (of membrane proteins) at 200 keV. Take home message: don’t treat your 200keV TEM only as a screening machine 😉. Fantastic work by @chancie_t and @rheinbergerj 👇🏼 sciencedirect.com/science?_ob=Ga…

Vikas Yadav 님이 재게시함

If you are at the 9th New England Cryo-EM symposium, be certain to stop by the poster being presented by our wonderful team member, Adrienne Wooster. We are highlighting lots of great new tools and innovations for cryo-EM sample prep. #cryoem #proteins #postersession

MiTeGen's tweet image. If you are at the 9th New England Cryo-EM symposium, be certain to stop by the poster being presented by our wonderful team member, Adrienne Wooster. We are highlighting lots of great new tools and innovations for cryo-EM sample prep.   #cryoem #proteins #postersession

Vikas Yadav 님이 재게시함

Cryo-EM structure of a voltage-gated ion channel in polarized vesicles. Super cool work from my colleague Shiva in the MacKinnon lab! pnas.org/doi/10.1073/pn…

Joel_S_Bloch's tweet image. Cryo-EM structure of a voltage-gated ion channel in polarized vesicles. Super cool work from my colleague Shiva in the MacKinnon lab!
pnas.org/doi/10.1073/pn…

Vikas Yadav 님이 재게시함

Really exciting to teach our bioinformatics students cutting edge science - how to view alpha fold predicted models for each of their assigned proteins. Thanks to @PDBeurope and PDBe-KB for making such nice search and online viewer tools #AlphaFold #wlvsbio #notinatextbookyet

AtomsAlice's tweet image. Really exciting to teach our bioinformatics students cutting edge science - how to view alpha fold predicted models for each of their assigned proteins. Thanks to @PDBeurope and PDBe-KB for making such nice search and online viewer tools #AlphaFold #wlvsbio #notinatextbookyet

Vikas Yadav 님이 재게시함

Crystal clusters diffracted poorly at synchrotrons but yielded 2A by MicroED with excellent refinement statistics. Data collected on. Titan Krios at 300kv, with a falcon4 in counting mode

gonenlab's tweet image. Crystal clusters diffracted poorly at synchrotrons but yielded 2A by MicroED with excellent refinement  statistics. Data collected on. Titan Krios at 300kv, with a falcon4 in counting mode

Vikas Yadav 님이 재게시함

An iterative approach for improving #AlphaFold protein model quality using experimental density maps, where rebuilt models are used as templates in new AlphaFold predictions, from @TerwillTom and colleagues. OA paper: nature.com/articles/s4159…

naturemethods's tweet image. An iterative approach for improving #AlphaFold protein model quality using experimental density maps, where rebuilt models are used as templates in new AlphaFold predictions, from @TerwillTom and colleagues. 
OA paper: nature.com/articles/s4159…

United States 트렌드

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