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wilstc's profile picture. predicting phenotypes 🖥🧬🔮 @transcriptabio

Will Connell

@wilstc

predicting phenotypes 🖥🧬🔮 @transcriptabio

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wilstc's profile picture.
Will Connell
 @wilstc
١٤ يونيو ٢٠٢٣ م

🧬🔮 Single cell foundation models have been a recent hot topic in bio-ML! A few of the recent methods and some thoughts 🧬🔮 1) Geneformer 2) scGPT 3) scFoundation 4) Exceiver

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Will Connell أعاد
genophoria's profile picture.
Hani Goodarzi
@genophoria
٦ أكتوبرم

Arc is hiring a unique role to lead the Virtual Cell Challenge. In its first year the Challenge has already attracted participation from thousands of top bio AI researchers and support from sponsors like NVIDIA. We need someone to help us make this annual competition historically…

genophoria's tweet image. Arc is hiring a unique role to lead the Virtual Cell Challenge. In its first year the Challenge has already attracted participation from thousands of top bio AI researchers and support from sponsors like NVIDIA. We need someone to help us make this annual competition historically…
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wilstc's profile picture.
Will Connell
 @wilstc
٣٠ سبتمبرم

Massive, clean Pertub-seq dataset. 8M cells, 2 cell types, deeply sequenced. 🧬🪩 👏

_annhuang's profile picture. i like science and cats. bioinformatics @xaira_thera
Ann Huang
 @_annhuang
٣٠ سبتمبرم

Virtual Cell community - this one's for you! X-Atlas/Orion is now live on Hugging Face. Train your own models with streamlined workflows built into the Hugging Face API. 🔗 HuggingFace: huggingface.co/datasets/Xaira… 📜 License: cc-by-nc-sa-4.0

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wilstc's profile picture.
Will Connell
 @wilstc
١٧ سبتمبرم

Awesome 👏🏼👏🏼

BrianHie's profile picture. AI for biology @Stanford and @arcinstitute
Brian Hie
 @BrianHie
١٧ سبتمبرم

Welcome to the age of generative genome design! In 1977, Sanger et al. sequenced the first genome—of phage ΦX174. Today, led by @samuelhking, we report the first AI-generated genomes. Using ΦX174 as a template, we made novel, high-fitness phages with genome language models. 🧵

BrianHie's tweet image. Welcome to the age of generative genome design! In 1977, Sanger et al. sequenced the first genome—of phage ΦX174. Today, led by @samuelhking, we report the first AI-generated genomes. Using ΦX174 as a template, we made novel, high-fitness phages with genome language models. 🧵
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wilstc's profile picture.
Will Connell
 @wilstc
٢٦ أغسطسم

*using the ctrl pop as a ref biases perturbation effects to be poorly distinguishable* a new study by @mariabrbic's lab reaches the same conclusion as the @ShiftBioscience study I highlighted recently 👏 ...with an nice fwd comment on model "utility" 😎 x.com/mariabrbic/sta…

wilstc's profile picture. predicting phenotypes 🖥🧬🔮 @transcriptabio
Will Connell
 @wilstc
٩ يوليوم

What is the state of research on the emerging grand challenge of virtual cell modeling? 1/n open.substack.com/pub/behindbiom…

wilstc's tweet image. What is the state of research on the emerging grand challenge of virtual cell modeling? 1/n open.substack.com/pub/behindbiom…
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lizbwood's profile picture.
Elizabeth Wood 🧬🖥️🥼
 @lizbwood
٢٢ يوليوم

The biggest challenge for AI in biology isn't just models, it's the data used to train them. Standard biological data isn't built for AI. To unlock generative AI for drug discovery, we must rethink how we generate and capture data. 1/

lizbwood's tweet image. The biggest challenge for AI in biology isn't just models, it's the data used to train them. Standard biological data isn't built for AI. To unlock generative AI for drug discovery, we must rethink how we generate and capture data. 1/
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