#basecalling 검색 결과
Stoked we *finally* got #nanopore #basecalling running on our latest Mercury Lab's computer system. Difficult to get Linux OS to recognize the eGPU for computations (mainly TB3 driver issues), but we eventually got it. ~30GB basecalled in 75 mins / ~300GB called in 12.5 hours!
Total #Nanoporn for @Nanopore users. Running MinKNOW with live high accuracy GPU #basecalling and translocation rate monitoring. Thanks @MF_Richardson for setup. Nicely done @rrwick the #Bioinfo_magician. #DeakinGenomics
By joining the forces #HenrikChristensen @strikkedrengen #basecalling with #guppy is solved! 💪😎 cant wait to run it on GPUs after this small test! 💻 #newbyjoy #collaborationisthekey 🤩
Go go go you beast, lets use your 10.000+ cuda cores for something more usefull than bitcoin mining! Doing ~5Mbase/sec using sup model. #basecalling #nanopore #nvidia #RTXA6000
Impressed with the @HP Zbook mobile workstation performance running @nanopore #Minion @DrMeaganDewar @MF_Richardson #Basecalling Keeping it tight for a laptop.
Second day of the @denbiOffice @CeBiTec @nanopore workshop started with an introduction to #basecalling with #albacore
A talk on @nanopore #basecalling using segmentation. #fascinating @abacbs #ABACBSGIW19 yao zhong Zhang
Second day of the @denbiOffice @CeBiTec @nanopore #workshop started with talks and hands ons of @denbiCloud, #basecalling & #Assembly
3rd day of the @denbiOffice @CeBiTec @nanopore course included sessions about #basecalling, #qualitycontrol and #data #processing
FuHsi: Shifting Base-Calling Closer to Sequencer via In-Cache Acceleration jcst.ict.ac.cn/en/article/pdf… #BaseCalling #InCache #accelerator #architecture #GenomeAnalysis #NanoporeSequencing #Institute_of_Computing_Technology @CAS__Science @UCAS1978
🔬 ¡Éxito en la sesión práctica de secuenciación por nanoporos ONT! Los participantes extrajeron ADN #metagenómico y 16S de cacao y suelo, prepararon genotecas, cargaron la celda y secuenciaron en tiempo real. Además, realizaron #basecalling y análisis taxonómico con #EPI2ME
RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data. #RNA #Sequencing @nanopore #Basecalling #Bioinformatics bmcbioinformatics.biomedcentral.com/articles/10.11… @BMCBioinfo
#mostview Basecalling Using Joint Raw and Event Nanopore Data Sequence-to-Sequence Processing mdpi.com/1424-8220/22/6… @WUT_edu #basecalling #sequence_to_sequence #nanopore #bioinformatics
Bonito v0.3.1 is live with a new fine-tuned basecalling model and accompanying medaka model. github.com/nanoporetech/b…
Big accuracy update coming in the next version of Bonito 🚀 v0.3.0 combines everything we have learned with structured and unstructured approaches - @dcpage3, Tim and myself are working hard on the finished touches this week - watch this space 👀
Woah! Today's @Nanopore #Nanoporn. #Basecalling Bonanza.
Construction of the nanojetfleet. Nano-supercomputer with 16 @NVIDIAEmbedded Jetson Nanos and 2 Xavier headnodes for processing @nanopore data.
Accelerated #nanopore #basecalling with SLOW5 data format | bioRxiv biorxiv.org/content/10.110…
Improved Nanopore Basecalling Models Help Reduce Sequencing Errors in Telomeres. @nanopore #Sequencing #Basecalling genomeweb.com/sequencing/imp…
genomeweb.com
Improved Nanopore Basecalling Models Help Reduce Sequencing Errors in Telomeres
By tuning the basecaller with accurate telomere data, researchers were able to correct extensive repeat-calling errors in telomeres by nanopore sequencing.
Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing. @nanopore #Basecalling genomebiology.biomedcentral.com/articles/10.11… via @GenomeBiology
FuHsi: Shifting Base-Calling Closer to Sequencer via In-Cache Acceleration jcst.ict.ac.cn/en/article/pdf… #BaseCalling #InCache #accelerator #architecture #GenomeAnalysis #NanoporeSequencing #Institute_of_Computing_Technology @CAS__Science @UCAS1978
🔬 ¡Éxito en la sesión práctica de secuenciación por nanoporos ONT! Los participantes extrajeron ADN #metagenómico y 16S de cacao y suelo, prepararon genotecas, cargaron la celda y secuenciaron en tiempo real. Además, realizaron #basecalling y análisis taxonómico con #EPI2ME
#mostview Basecalling Using Joint Raw and Event Nanopore Data Sequence-to-Sequence Processing mdpi.com/1424-8220/22/6… @WUT_edu #basecalling #sequence_to_sequence #nanopore #bioinformatics
3/6 The #basecalling review points to issues of standardization as well. The absence of standardized benchmarking and evaluation metrics hinders progress, making it difficult to distinguish data-driven improvements from model-driven ones.
Basecalling on the cloud ? Yes you can. Well, it costs a bit... But the good thing is that you don't need to bring out the biggest gun ;) #ONT #Basecalling #Cloud #AWS aws.amazon.com/blogs/hpc/benc…
nPoRe: n-polymer realigner for improved pileup-based variant calling. #LongReads #BaseCalling @BMCBioinfo bmcbioinformatics.biomedcentral.com/articles/10.11…
Accelerated #nanopore #basecalling with SLOW5 data format | bioRxiv biorxiv.org/content/10.110…
Improved Nanopore Basecalling Models Help Reduce Sequencing Errors in Telomeres. @nanopore #Sequencing #Basecalling genomeweb.com/sequencing/imp…
genomeweb.com
Improved Nanopore Basecalling Models Help Reduce Sequencing Errors in Telomeres
By tuning the basecaller with accurate telomere data, researchers were able to correct extensive repeat-calling errors in telomeres by nanopore sequencing.
RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data. #RNA #Sequencing @nanopore #Basecalling #Bioinformatics bmcbioinformatics.biomedcentral.com/articles/10.11… @BMCBioinfo
Go go go you beast, lets use your 10.000+ cuda cores for something more usefull than bitcoin mining! Doing ~5Mbase/sec using sup model. #basecalling #nanopore #nvidia #RTXA6000
By joining the forces #HenrikChristensen @strikkedrengen #basecalling with #guppy is solved! 💪😎 cant wait to run it on GPUs after this small test! 💻 #newbyjoy #collaborationisthekey 🤩
After exciting #Mk1C run next steps is 1) to see it crashing during #basecalling 2) spend hours to get raw data 3) find extremely kind people who offer to do #HAC on my data as I have no ways to handle it 🙈#bioinformaticsPeopleAreTheBest 🙏❤️
GPU Basecalling-Test on Debian Linux WSL 2 😉youtu.be/EEN3NGA0mf8 via @YouTube #basecalling, #Debian, #WSL2, #Long_read_sequence, #Ont
youtube.com
YouTube
GPU Basecalling-Test on Debian Linux WSL 2
Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing. @nanopore #Basecalling genomebiology.biomedcentral.com/articles/10.11… via @GenomeBiology
Perhaps also a new tool to help training the #guppy #basecalling model for @nanopore sequencing?
Programmable m6A modification of cellular RNAs with a Cas13-directed methyltransferase go.nature.com/2ZzfKiv
3rd day of the @denbiOffice @CeBiTec @nanopore course included sessions about #basecalling, #qualitycontrol and #data #processing
Bonito v0.3.1 is live with a new fine-tuned basecalling model and accompanying medaka model. github.com/nanoporetech/b…
Big accuracy update coming in the next version of Bonito 🚀 v0.3.0 combines everything we have learned with structured and unstructured approaches - @dcpage3, Tim and myself are working hard on the finished touches this week - watch this space 👀
By joining the forces #HenrikChristensen @strikkedrengen #basecalling with #guppy is solved! 💪😎 cant wait to run it on GPUs after this small test! 💻 #newbyjoy #collaborationisthekey 🤩
🔬 ¡Éxito en la sesión práctica de secuenciación por nanoporos ONT! Los participantes extrajeron ADN #metagenómico y 16S de cacao y suelo, prepararon genotecas, cargaron la celda y secuenciaron en tiempo real. Además, realizaron #basecalling y análisis taxonómico con #EPI2ME
Second day of the @denbiOffice @CeBiTec @nanopore #workshop started with talks and hands ons of @denbiCloud, #basecalling & #Assembly
Second day of the @denbiOffice @CeBiTec @nanopore workshop started with an introduction to #basecalling with #albacore
Stoked we *finally* got #nanopore #basecalling running on our latest Mercury Lab's computer system. Difficult to get Linux OS to recognize the eGPU for computations (mainly TB3 driver issues), but we eventually got it. ~30GB basecalled in 75 mins / ~300GB called in 12.5 hours!
Total #Nanoporn for @Nanopore users. Running MinKNOW with live high accuracy GPU #basecalling and translocation rate monitoring. Thanks @MF_Richardson for setup. Nicely done @rrwick the #Bioinfo_magician. #DeakinGenomics
3rd day of the @denbiOffice @CeBiTec @nanopore course included sessions about #basecalling, #qualitycontrol and #data #processing
FuHsi: Shifting Base-Calling Closer to Sequencer via In-Cache Acceleration jcst.ict.ac.cn/en/article/pdf… #BaseCalling #InCache #accelerator #architecture #GenomeAnalysis #NanoporeSequencing #Institute_of_Computing_Technology @CAS__Science @UCAS1978
github.com/nanoporetech/b… - #nanopore #basecalling #pytorch - Convolution Basecaller for Oxford Nanopore Reads nanoporetech.com @albertvilella
Go go go you beast, lets use your 10.000+ cuda cores for something more usefull than bitcoin mining! Doing ~5Mbase/sec using sup model. #basecalling #nanopore #nvidia #RTXA6000
#mostview Basecalling Using Joint Raw and Event Nanopore Data Sequence-to-Sequence Processing mdpi.com/1424-8220/22/6… @WUT_edu #basecalling #sequence_to_sequence #nanopore #bioinformatics
A talk on @nanopore #basecalling using segmentation. #fascinating @abacbs #ABACBSGIW19 yao zhong Zhang
Impressed with the @HP Zbook mobile workstation performance running @nanopore #Minion @DrMeaganDewar @MF_Richardson #Basecalling Keeping it tight for a laptop.
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