#bioml search results
2/ To draw parallels between #NLP and #BioML, if UniProt=Wikipedia, then metagenomes=CommonCrawl for bio seqs! Metagenomes are the largest datasets featuring incredible diversity, but like CommonCrawl, they require extensive pre-processing, resulting in underutilization in #BioML
Today we're open-sourcing DGEB, the first large-scale functional evaluation benchmark for biological language models 🧬 DGEB fills a key gap in BioML by providing diverse functional benchmarks for assessing pLM and gLM representations. #BioML 🧵 x.com/tatta_bio/stat…
Today we introduce DGEB, Diverse Genomic Embedding Benchmarks built for functional evaluations of biological language models! Check out our github repo: github.com/TattaBio/DGEB
"In other words, here’s the answer to my previous question:" [@ElliotHershberg] #synBio #BioML #BioViz
![crc8's tweet image. "In other words, here’s the answer to my previous question:"
[@ElliotHershberg]
#synBio #BioML #BioViz](https://pbs.twimg.com/media/Fuc2P-ZakAM8cX9.jpg)
"What new interfaces and experiences are possible for biologists?" [@ElliotHershberg] #synBio #BioML #BioViz
![crc8's tweet image. "What new interfaces and experiences are possible for biologists?"
[@ElliotHershberg]
#synBio #BioML #BioViz](https://pbs.twimg.com/media/Fuc2CRYaIAAyK4p.jpg)
"What kind of interface could be designed for protein designers using this type of language?" [@ElliotHershberg] #synBio #BioML #BioViz
![crc8's tweet image. "What kind of interface could be designed for protein designers using this type of language?"
[@ElliotHershberg]
#synBio #BioML #BioViz](https://pbs.twimg.com/media/Fuc2cHLaMAAw2LY.jpg)
This one just the beginning we got a lot more. We dropping this one tonight at 12 A.M. only on Sound Cloud. Stay tune for the link. #BIOML
👏🏼We had a productive #BioML meetup at Hero House yesterday. Thanks to everyone who joined in on the conversations about #data and #ML in #healthcare.
@saakohl recently gave a talk at the BioML seminar, sharing valuable insights about the intersection of Machine Learning and biology, his experience with AlphaFold2, and his current projects at Latent Labs. 🧬🤖 #BioML via Bend.ai
Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science
We are thrilled to make the OMG dataset and gLM2 models available for the research community! Check out our latest preprint at tatta.bio/omg (BioRxiv link coming soon)
"...there seemed to be a sizable gap between the BioML and BioViz communities:" [@ElliotHershberg] #synBio #BioML #BioViz centuryofbio.substack.com/p/interactive-…
![crc8's tweet image. "...there seemed to be a sizable gap between the BioML and BioViz communities:"
[@ElliotHershberg]
#synBio #BioML #BioViz
centuryofbio.substack.com/p/interactive-…](https://pbs.twimg.com/media/Fuc1ZNuagAAqshh.jpg)
📢Real-time context-aware protein search is here! We are thrilled to release Gaia, a gLM2-powered search tool for microbial protein sequence annotation and exploration. Give it a try and let us know what you think! gaia.tatta.bio #BioML
Here for 4th annual @Imageomics all-hands mtg #Imageomics #ImageomicsInstitute #BioML #Bio #ML #ComputerVision #LifeScience #Translational #DataAnalytics #Ecology #Zoology #PlantScience #Phenotyping #Wildlife #CompBio (@ Pomerene Hall (PO) in Columbus, OH) swarmapp.com/user/5108837/c…
We are looking for a new computational PhD candidate with expertise and interest in #bioML to bring our exciting project on modeling the function of terpene synthases to a next level! 🪴🧬🤖Our recent preprint: biorxiv.org/content/10.110…
#PhDposition #bioinformatics Apply for a PhD position in the @tomas_pluskal group @IOCBPrague @CzechAcademy, funded by the #MSCADoctoralNetwork ‘ModBioTerp’. 💥 Project: Modeling the mechanisms of terpene biosynthesis using #deeplearning 💥 uochb.cz/en/open-positi…
An interesting #bioML perspective talking about the current limitations on using deep learning models for biological phenomena with no ground truth. Worth a read!
I'm thrilled to see @math_rachel's interesting new article, on a recent deep learning microbiology paper, getting the attention it deserves -- check it out if you haven't seen it yet! rachel.fast.ai/posts/2025-06-…
Better Molecules, Faster: NVIDIA NIM Agent Blueprint Redefines Hit Identification With Generative AI-Based Virtual Screening blogs.nvidia.com/blog/nvidia-ni… #bioml #ai4health
blogs.nvidia.com
Better Molecules, Faster: NVIDIA Blueprint Redefines Hit Identification With Generative AI-Based...
The NVIDIA NIM Agent Blueprint for generative AI-based virtual screening will help reduce the time and cost of developing life-saving drugs.
#BioML #Genomics #Bioinformatics people Any Pytorch/Jax models that can be easily exported to StableHLO (tokenizers aside), this is to provide example programs for the R XLA project
The SO3LR model is now officially out in @J_A_C_S ! Great work everyone! 👏 After an intense week at #psik2025 learning of other #foundational models, it is up to every researcher to decide which ML model best fits the needs of their research. Exciting times ahead! 😉 #bioml
Molecular Simulations with a Pretrained Neural Network and Universal Pairwise Force Fields | Journal of the American Chemical Society @TUBerlin @bifoldberlin @maxplanckpress @TCPUniLu pubs.acs.org/doi/10.1021/ja…
An interesting #bioML perspective talking about the current limitations on using deep learning models for biological phenomena with no ground truth. Worth a read!
I'm thrilled to see @math_rachel's interesting new article, on a recent deep learning microbiology paper, getting the attention it deserves -- check it out if you haven't seen it yet! rachel.fast.ai/posts/2025-06-…
Here for 4th annual @Imageomics all-hands mtg #Imageomics #ImageomicsInstitute #BioML #Bio #ML #ComputerVision #LifeScience #Translational #DataAnalytics #Ecology #Zoology #PlantScience #Phenotyping #Wildlife #CompBio (@ Pomerene Hall (PO) in Columbus, OH) swarmapp.com/user/5108837/c…
Yo boston silver line is like Tesla tunnels but with buses. #exploring the city #I need more hobbies. #bioml
📢Real-time context-aware protein search is here! We are thrilled to release Gaia, a gLM2-powered search tool for microbial protein sequence annotation and exploration. Give it a try and let us know what you think! gaia.tatta.bio #BioML
Better Molecules, Faster: NVIDIA NIM Agent Blueprint Redefines Hit Identification With Generative AI-Based Virtual Screening blogs.nvidia.com/blog/nvidia-ni… #bioml #ai4health
blogs.nvidia.com
Better Molecules, Faster: NVIDIA Blueprint Redefines Hit Identification With Generative AI-Based...
The NVIDIA NIM Agent Blueprint for generative AI-based virtual screening will help reduce the time and cost of developing life-saving drugs.
2/ To draw parallels between #NLP and #BioML, if UniProt=Wikipedia, then metagenomes=CommonCrawl for bio seqs! Metagenomes are the largest datasets featuring incredible diversity, but like CommonCrawl, they require extensive pre-processing, resulting in underutilization in #BioML
Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science
We are thrilled to make the OMG dataset and gLM2 models available for the research community! Check out our latest preprint at tatta.bio/omg (BioRxiv link coming soon)
We are looking for a new computational PhD candidate with expertise and interest in #bioML to bring our exciting project on modeling the function of terpene synthases to a next level! 🪴🧬🤖Our recent preprint: biorxiv.org/content/10.110…
#PhDposition #bioinformatics Apply for a PhD position in the @tomas_pluskal group @IOCBPrague @CzechAcademy, funded by the #MSCADoctoralNetwork ‘ModBioTerp’. 💥 Project: Modeling the mechanisms of terpene biosynthesis using #deeplearning 💥 uochb.cz/en/open-positi…
Super excited to help organise this one, check the workshop out at ml4lms.bio! #ICML #bioML
Our workshop ML4LMS = "ML for Life and Material Science: From Theory to Industry Applications" has been accepted for ICML this year. We have a fantastic line-up and are quickly editing submission guidlines, a website, and much more.
@saakohl recently gave a talk at the BioML seminar, sharing valuable insights about the intersection of Machine Learning and biology, his experience with AlphaFold2, and his current projects at Latent Labs. 🧬🤖 #BioML via Bend.ai
Under or overhyped? #bioML anitbody discovery with e2e testing outside simulations wired.com/story/labgeniu…
"What kind of interface could be designed for protein designers using this type of language?" [@ElliotHershberg] #synBio #BioML #BioViz
"In other words, here’s the answer to my previous question:" [@ElliotHershberg] #synBio #BioML #BioViz
"What new interfaces and experiences are possible for biologists?" [@ElliotHershberg] #synBio #BioML #BioViz
"...there seemed to be a sizable gap between the BioML and BioViz communities:" [@ElliotHershberg] #synBio #BioML #BioViz centuryofbio.substack.com/p/interactive-…
I found a relevant #bioML paper, good effort and of interest to the #Bioinformatics ∩ #DL community, but it seems to have been rushed "Self-supervised learning on millions of pre-mRNA sequences improves sequence-based RNA splicing prediction" biorxiv.org/content/10.110…
2/ To draw parallels between #NLP and #BioML, if UniProt=Wikipedia, then metagenomes=CommonCrawl for bio seqs! Metagenomes are the largest datasets featuring incredible diversity, but like CommonCrawl, they require extensive pre-processing, resulting in underutilization in #BioML
Today we're open-sourcing DGEB, the first large-scale functional evaluation benchmark for biological language models 🧬 DGEB fills a key gap in BioML by providing diverse functional benchmarks for assessing pLM and gLM representations. #BioML 🧵 x.com/tatta_bio/stat…
Today we introduce DGEB, Diverse Genomic Embedding Benchmarks built for functional evaluations of biological language models! Check out our github repo: github.com/TattaBio/DGEB
"In other words, here’s the answer to my previous question:" [@ElliotHershberg] #synBio #BioML #BioViz
"What new interfaces and experiences are possible for biologists?" [@ElliotHershberg] #synBio #BioML #BioViz
"What kind of interface could be designed for protein designers using this type of language?" [@ElliotHershberg] #synBio #BioML #BioViz
This one just the beginning we got a lot more. We dropping this one tonight at 12 A.M. only on Sound Cloud. Stay tune for the link. #BIOML
@saakohl recently gave a talk at the BioML seminar, sharing valuable insights about the intersection of Machine Learning and biology, his experience with AlphaFold2, and his current projects at Latent Labs. 🧬🤖 #BioML via Bend.ai
👏🏼We had a productive #BioML meetup at Hero House yesterday. Thanks to everyone who joined in on the conversations about #data and #ML in #healthcare.
"...there seemed to be a sizable gap between the BioML and BioViz communities:" [@ElliotHershberg] #synBio #BioML #BioViz centuryofbio.substack.com/p/interactive-…
Here for 4th annual @Imageomics all-hands mtg #Imageomics #ImageomicsInstitute #BioML #Bio #ML #ComputerVision #LifeScience #Translational #DataAnalytics #Ecology #Zoology #PlantScience #Phenotyping #Wildlife #CompBio (@ Pomerene Hall (PO) in Columbus, OH) swarmapp.com/user/5108837/c…
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