#cellphonedb search results
We then use #CellphoneDB to find the interacting mesenchymal and smooth muscle cells that tell uniform progenitors to transition to villi. So much chatter going on between these cells!
#CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes Python "a practical step-by-step guide"😎 bring back the website data portal, pls🙏 @mirjana_e @roserventotormo @NatureProtocols 2020 nature.com/articles/s4159…
Pacemaker Cell firing 🕰 is spontaneous and tightly controlled🎛. P cell ion channel & GPCR profiles support this and show differences vs 🐭. We made a #CellPhoneDB module (>1k new L-R pairs) showing synapse-like interactions with glial cells enriched in their nodal niche. 4/n
To ‘share and share alike’ – In this blog, @roserventotormo @sangerinstitute, explains why #CellPhoneDB, a friendly #OpenSource platform, is good for #DataSharing & collaborations, encouraging others to share their own cell interactions on the database blog.wellcomeopenresearch.org/2020/07/17/to-…
And to my knowledge, the first time #CellPhoneDB is used in a mouse data set @roserventotormo?
News &Views discussing the latest implementation of the computational tool #CellPhoneDB for inferring #cellcellcommunication from #singlecelldata bit.ly/42gSmXi
#NewNProt: Protocol Update of #CellPhoneDB, describing an expanded database of molecular interactors and new approaches to infer, prioritise and visualise the results bit.ly/4lbG2Af and see associated News & Views article
What a fantastic article and resource! Congratulations @roserventotormo and colleagues #CellPhoneDB : #cell–cell communication #scRNAseq nature.com/articles/s4159…
nature.com
CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–r...
Nature Protocols - CellPhoneDB combines an interactive database and a statistical framework for the exploration of ligand–receptor interactions inferred from single-cell transcriptomics...
#SingleCellSequencing session! 🥳 1st: Approaches to study cell-cell interaction in #SingleCell. Henderson lab @EdinUni_MeetCIR uses #CellPhoneDB followed by human curation. Good but focused on what's already known. #SpatialTranscriptomics is cool but spots have many cells...
Resources include #CellPhoneDB (@roserventotormo @mirjana_e), #MatrisomeDB, #Adhesome, #Surfaceome, receptome.org, wlab.ethz.ch/cspa/, #Membranome, #MatrixDB, Locate, #ComPPI, Gene Ontology @news4go, @DGI_db, Ramilowski2015, Kirouac2010, Zhong2015, @GuidetoPHARM
‘Share & share alike’ - @roserventotormo @sangerinstitute, explains why #CellPhoneDB, a friendly #OpenSource platform, is good for #DataSharing & collaborations, & discusses the benefits of #OpenData for exploring new research angles @teichlab #ECROpenData blog.wellcomeopenresearch.org/2020/07/17/to-…
News &Views discussing the latest implementation of the computational tool #CellPhoneDB for inferring #cellcellcommunication from #singlecelldata bit.ly/42gSmXi
#NewNProt: Protocol Update of #CellPhoneDB, describing an expanded database of molecular interactors and new approaches to infer, prioritise and visualise the results bit.ly/4lbG2Af and see associated News & Views article
Pacemaker Cell firing 🕰 is spontaneous and tightly controlled🎛. P cell ion channel & GPCR profiles support this and show differences vs 🐭. We made a #CellPhoneDB module (>1k new L-R pairs) showing synapse-like interactions with glial cells enriched in their nodal niche. 4/n
#CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes Python "a practical step-by-step guide"😎 bring back the website data portal, pls🙏 @mirjana_e @roserventotormo @NatureProtocols 2020 nature.com/articles/s4159…
We then use #CellphoneDB to find the interacting mesenchymal and smooth muscle cells that tell uniform progenitors to transition to villi. So much chatter going on between these cells!
#SingleCellSequencing session! 🥳 1st: Approaches to study cell-cell interaction in #SingleCell. Henderson lab @EdinUni_MeetCIR uses #CellPhoneDB followed by human curation. Good but focused on what's already known. #SpatialTranscriptomics is cool but spots have many cells...
‘Share & share alike’ - @roserventotormo @sangerinstitute, explains why #CellPhoneDB, a friendly #OpenSource platform, is good for #DataSharing & collaborations, & discusses the benefits of #OpenData for exploring new research angles @teichlab #ECROpenData blog.wellcomeopenresearch.org/2020/07/17/to-…
To ‘share and share alike’ – In this blog, @roserventotormo @sangerinstitute, explains why #CellPhoneDB, a friendly #OpenSource platform, is good for #DataSharing & collaborations, encouraging others to share their own cell interactions on the database blog.wellcomeopenresearch.org/2020/07/17/to-…
And to my knowledge, the first time #CellPhoneDB is used in a mouse data set @roserventotormo?
What a fantastic article and resource! Congratulations @roserventotormo and colleagues #CellPhoneDB : #cell–cell communication #scRNAseq nature.com/articles/s4159…
nature.com
CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–r...
Nature Protocols - CellPhoneDB combines an interactive database and a statistical framework for the exploration of ligand–receptor interactions inferred from single-cell transcriptomics...
Resources include #CellPhoneDB (@roserventotormo @mirjana_e), #MatrisomeDB, #Adhesome, #Surfaceome, receptome.org, wlab.ethz.ch/cspa/, #Membranome, #MatrixDB, Locate, #ComPPI, Gene Ontology @news4go, @DGI_db, Ramilowski2015, Kirouac2010, Zhong2015, @GuidetoPHARM
#CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes Python "a practical step-by-step guide"😎 bring back the website data portal, pls🙏 @mirjana_e @roserventotormo @NatureProtocols 2020 nature.com/articles/s4159…
We then use #CellphoneDB to find the interacting mesenchymal and smooth muscle cells that tell uniform progenitors to transition to villi. So much chatter going on between these cells!
Pacemaker Cell firing 🕰 is spontaneous and tightly controlled🎛. P cell ion channel & GPCR profiles support this and show differences vs 🐭. We made a #CellPhoneDB module (>1k new L-R pairs) showing synapse-like interactions with glial cells enriched in their nodal niche. 4/n
To ‘share and share alike’ – In this blog, @roserventotormo @sangerinstitute, explains why #CellPhoneDB, a friendly #OpenSource platform, is good for #DataSharing & collaborations, encouraging others to share their own cell interactions on the database blog.wellcomeopenresearch.org/2020/07/17/to-…
‘Share & share alike’ - @roserventotormo @sangerinstitute, explains why #CellPhoneDB, a friendly #OpenSource platform, is good for #DataSharing & collaborations, & discusses the benefits of #OpenData for exploring new research angles @teichlab #ECROpenData blog.wellcomeopenresearch.org/2020/07/17/to-…
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