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#spatialtranscriptomics 검색 결과

HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 10. 13.

#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…

HaoYin20's tweet image. #SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 28.

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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DanielZucha's profile picture. Spending days with Neurobiology | Bioinformatics | Human nature. Don't believe your ideas, test them. 🧠⚡️PhD student in @labgenex, mentored by @LukasValihrach
Daniel Žucha
 @DanielZucha
. 10. 11.

⚡️Exciting Breakthrough in Progressive Multiple Sclerosis⚡️ Much humbled to contribute to this exciting project from @Pluchinolab . Analysing 200+ sections from 50+ patients, showcases the power of #spatialtranscriptomics in rare cell localization. 🧠 @IBT_CAS @LukasValihrach

Telencephale's profile picture. neural stem cells & the choroid plexus in progressive MS using patient-based 2D and 3D cellular models Incoming assistant professor @UAMShealth March 2026
Alexandra Nicaise
 @Telencephale
. 10. 11.

Proud to see our work out in @NeuroCellPress ! cell.com/neuron/fulltex… With Bongsoo Park, Dimitris Tsitsipatis @DanielZucha @LukasValihrach @irina_mohorianu @Pluchinolab @BeermanHSCaging !

Telencephale's tweet card. Park, Nicaise, Tsitsipatis, and colleagues discover transcriptional and epigenetic markers in human PMS iNSCs and fibroblasts that may underlie their senescent and inflammatory state. Novel DARGs...
Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated...
출처: cell.com
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 10. 4.

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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10xGenomics's profile picture. Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
10x Genomics
 @10xGenomics
. 9. 2.

Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz

10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
. 1. 30.

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025

LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
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Valeriechew29's profile picture. Cancer immunologist, liver cancer, translational immunology @Singhealth. Assoc Prof @DukeNUS
Valerie Chew
 @Valeriechew29
2023. 11. 8.

Good food and science. What more can I ask for? #cancerimmunology #spatialtranscriptomics

Valeriechew29's tweet image. Good food and science. What more can I ask for? #cancerimmunology #spatialtranscriptomics
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FanZhang_Jessie's profile picture. Principal Investigator | Zhang lab @CUAnschutz @CUHealthAI @CURheumatology | #SingleCell #ML #AI #TranslationalMedicine | Alumni @harvardmed @broadinstitute
Dr. Fan Zhang ⛵️
 @FanZhang_Jessie
. 8. 12.

Thrilled 🎉 to shared I received my R01 NoA today @NIH_NIAMS! We will continue pushing the frontiers of autoimmune research by developing novel #AI #MachineLearning for #SpatialTranscriptomics and #SingleCell modalities 🧬💻💊! @CUAnschutz @CUDeptMedicine @CUBiomedInfo

FanZhang_Jessie's tweet image. Thrilled 🎉 to shared I received my R01 NoA today @NIH_NIAMS! We will continue pushing the frontiers of autoimmune research by developing novel #AI #MachineLearning for #SpatialTranscriptomics and #SingleCell modalities 🧬💻💊! @CUAnschutz @CUDeptMedicine @CUBiomedInfo
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OhioStatePIIO's profile picture. Pelotonia Institute for Immuno-Oncology. A bench-to-bedside research initiative accelerating therapeutics that use the immune system to fight cancer. #PIIO
Pelotonia Institute for Immuno-Oncology
@OhioStatePIIO
. 9. 19.

🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…

OhioStatePIIO's tweet image. 🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 5. 22.

#SpatialTranscriptomics #BatchCorrelation SpaBatch Align multi-slice sequencing-based spatial data Visium ST Stereo-seq #VariationalGraphAutoEncoder Masked data augmentation vs STG3Net STAligner SEDR DeepST SpaGIC STitch3D bioRxiv 2025 biorxiv.org/content/10.110…

HaoYin20's tweet image. #SpatialTranscriptomics #BatchCorrelation SpaBatch Align multi-slice sequencing-based spatial data Visium ST Stereo-seq #VariationalGraphAutoEncoder Masked data augmentation vs STG3Net STAligner SEDR DeepST SpaGIC STitch3D bioRxiv 2025 biorxiv.org/content/10.110…
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NancyZh60672287's profile picture. Genomics, Computational Biology, Professor of Statistics and Data Science at UPenn
Nancy Zhang
 @NancyZh60672287
2024. 1. 17.

How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9

NancyZh60672287's tweet image. How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 1.

#SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…

HaoYin20's tweet image. #SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 5. 16.

SIMO Integration of multimodal single-cell omics (incld SNARE-seq ISSAAC-seq) with #SpatialTranscriptomics Modality-specific kNN + fused Gromov-Wasserstein #OptimalTransport vs CARD LIGER Scanorama Seurat Tangram Spatial ATAC-RNAseq Spatial CUT&TAG-RNAseq Re-analysis of…

HaoYin20's tweet image. SIMO Integration of multimodal single-cell omics (incld SNARE-seq ISSAAC-seq) with #SpatialTranscriptomics Modality-specific kNN + fused Gromov-Wasserstein #OptimalTransport vs CARD LIGER Scanorama Seurat Tangram Spatial ATAC-RNAseq Spatial CUT&TAG-RNAseq Re-analysis of…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 15.

#SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…

HaoYin20's tweet image. #SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…
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DiannaHNguyen1's profile picture. Resident Physician @UTHPMR | #Physiatry | @AOCPMR National Resident Council | @utarlington @TCOM_UNTHSC @SBS_UNTHSC Alum
Dianna H. Nguyen, DO, PhD
 @DiannaHNguyen1
2024. 3. 27.

GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A

DiannaHNguyen1's tweet image. GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A
DiannaHNguyen1's tweet image. GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 7. 18.

STOmicsDB #SpatialTranscriptomics repository Coding-free visualization & re-analysis of published ST datasets (if you have a specific question) 361 datasets 128 tissues 17 species db.cngb.org/stomics/ #NucAcidRes 2023 academic.oup.com/nar/article/52…

HaoYin20's tweet image. STOmicsDB #SpatialTranscriptomics repository Coding-free visualization & re-analysis of published ST datasets (if you have a specific question) 361 datasets 128 tissues 17 species db.cngb.org/stomics/ #NucAcidRes 2023 academic.oup.com/nar/article/52…
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
. 3. 23.

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet

LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 10. 13.

#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…

HaoYin20's tweet image. #SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
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DanielZucha's profile picture. Spending days with Neurobiology | Bioinformatics | Human nature. Don't believe your ideas, test them. 🧠⚡️PhD student in @labgenex, mentored by @LukasValihrach
Daniel Žucha
 @DanielZucha
. 10. 11.

⚡️Exciting Breakthrough in Progressive Multiple Sclerosis⚡️ Much humbled to contribute to this exciting project from @Pluchinolab . Analysing 200+ sections from 50+ patients, showcases the power of #spatialtranscriptomics in rare cell localization. 🧠 @IBT_CAS @LukasValihrach

Telencephale's profile picture. neural stem cells & the choroid plexus in progressive MS using patient-based 2D and 3D cellular models Incoming assistant professor @UAMShealth March 2026
Alexandra Nicaise
 @Telencephale
. 10. 11.

Proud to see our work out in @NeuroCellPress ! cell.com/neuron/fulltex… With Bongsoo Park, Dimitris Tsitsipatis @DanielZucha @LukasValihrach @irina_mohorianu @Pluchinolab @BeermanHSCaging !

Telencephale's tweet card. Park, Nicaise, Tsitsipatis, and colleagues discover transcriptional and epigenetic markers in human PMS iNSCs and fibroblasts that may underlie their senescent and inflammatory state. Novel DARGs...
Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated...
출처: cell.com
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GENbio's profile picture. Serving the biotech industry since 1981. EIC @johnsterling4; publisher @liebertpub Subscribe to GEN: https://t.co/KzqMccOt9Q
Genetic Engineering & Biotechnology News
 @GENbio
. 10. 8.

ChatGPT-Like AI Model Details 1,300 Regions/Subregions in Mouse Brain Map Tissue-agnostic CellTransformer can be used on other organs and tissues, including cancerous tissue, for which large-scale #spatialtranscriptomics data is available @UCSF #brain #AI hubs.li/Q03MQQXq0

GENbio's tweet card. Tissue-agnostic CellTransformer can be used on other organs and tissues, including cancerous tissue, for which large-scale spatial transcriptomics data is available.
ChatGPT-Like AI Model Details 1,300 Regions/Subregions in Mouse Brain Map
출처: genengnews.com
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Decode_Science's profile picture. We are Australia and New Zealand distributors, helping scientists by providing world class genomics products and trusted technical support.
Decode Science
 @Decode_Science
. 10. 8.

🚀 Pilot Now Open: @ST_Omics OMNI with @SA_genomics & Decode Science Perfect for generating pilot data, exploring new projects, and strengthening grant applications. 🔗 Learn more: app-ap1.hubspotdocuments.com/documents/2389… #SpatialTranscriptomics #SingleCell #Genomics #EnablingDiscovery

SA_genomics's profile picture. A not-for-profit, providing a broad range of standard and custom Genomic and Bioinformatic services at a state-of-the-art level.
South Australian Genomics Centre (SAGC)
 @SA_genomics
. 10. 7.

Now Open! STOmics OMNI pilot - SAGC, @Decode_Science - spatial RNA from FFPE—end-to-end service. Why STOmics OMNI? ✅ Species-agnostic ✅ Random hexamers (total RNA) ✅ 10×10 mm area at high res (500 nm) ✅ End-to-end workflow Get your projects ready→ap1.hubs.ly/y0hZyD0

SA_genomics's tweet image. Now Open! STOmics OMNI pilot - SAGC, @Decode_Science - spatial RNA from FFPE—end-to-end service. Why STOmics OMNI? ✅ Species-agnostic ✅ Random hexamers (total RNA) ✅ 10×10 mm area at high res (500 nm) ✅ End-to-end workflow Get your projects ready→ap1.hubs.ly/y0hZyD0
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 10. 4.

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 28.

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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pathsoc's profile picture. The Pathological Society of Great Britain and Ireland | Promoting the understanding of disease through research and education in pathology for over a century
Pathological Society
 @pathsoc
. 9. 26.

Latest Editor’s Choice! #TheJournalOfPathology: 'Spatial transcriptomics exploration of the primary neuroblastoma microenvironment in archived FFPE samples unveils novel paracrine interactions' …thsocjournals.onlinelibrary.wiley.com/doi/10.1002/pa… #Neuroblastoma #SpatialTranscriptomics #Pathology #PathSoc

pathsoc's tweet image. Latest Editor’s Choice! #TheJournalOfPathology: 'Spatial transcriptomics exploration of the primary neuroblastoma microenvironment in archived FFPE samples unveils novel paracrine interactions' …thsocjournals.onlinelibrary.wiley.com/doi/10.1002/pa… #Neuroblastoma #SpatialTranscriptomics #Pathology #PathSoc
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vizgen_inc's profile picture. Confidently take your research to new depths with MERSCOPE Ultra integrating single-cell and spatial multiomics analysis powered by MERFISH technology.
Vizgen
@vizgen_inc
. 9. 26.

New data release highlights the power of MERSCOPE Ultra to capture high-resolution #spatialtranscriptomics across a 3.0 cm² imaging area: • Mouse embryo tissue (E10, E12, and E14) on same slide • Normal and Alzheimer’s human brain on same slide hubs.ly/Q03KH7VN0

vizgen_inc's tweet image. New data release highlights the power of MERSCOPE Ultra to capture high-resolution #spatialtranscriptomics across a 3.0 cm² imaging area: • Mouse embryo tissue (E10, E12, and E14) on same slide • Normal and Alzheimer’s human brain on same slide hubs.ly/Q03KH7VN0
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10xGenomics's profile picture. Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
10x Genomics
 @10xGenomics
. 9. 2.

Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz

10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 28.

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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simocristea's profile picture. cancer genomics AI scientist; head of Data Science & AI and group leader @DanaFarber_Hale; research scientist @Harvard; phd @eth.🇷🇴🇸🇪🇨🇭🇺🇸
Simona Cristea
@simocristea
2023. 2. 23.

🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]

simocristea's tweet image. 🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]
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NancyZh60672287's profile picture. Genomics, Computational Biology, Professor of Statistics and Data Science at UPenn
Nancy Zhang
 @NancyZh60672287
2024. 1. 17.

How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9

NancyZh60672287's tweet image. How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9
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BrantBassamPhD's profile picture. Spatial biology specialist—technophile—publisher—artist—atheist —Elon —David Deutsch—Thomas Sowell. Show me the data. Opinions are mine.
Brant Bassam
@BrantBassamPhD
2023. 11. 21.

We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…

BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
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ScienceStowers's profile picture. Celebrating 25 years of discovery. #Stowers25
Stowers Institute
 @ScienceStowers
2023. 6. 15.

Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR

ScienceStowers's tweet image. Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 5. 22.

#SpatialTranscriptomics #BatchCorrelation SpaBatch Align multi-slice sequencing-based spatial data Visium ST Stereo-seq #VariationalGraphAutoEncoder Masked data augmentation vs STG3Net STAligner SEDR DeepST SpaGIC STitch3D bioRxiv 2025 biorxiv.org/content/10.110…

HaoYin20's tweet image. #SpatialTranscriptomics #BatchCorrelation SpaBatch Align multi-slice sequencing-based spatial data Visium ST Stereo-seq #VariationalGraphAutoEncoder Masked data augmentation vs STG3Net STAligner SEDR DeepST SpaGIC STitch3D bioRxiv 2025 biorxiv.org/content/10.110…
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OhioStatePIIO's profile picture. Pelotonia Institute for Immuno-Oncology. A bench-to-bedside research initiative accelerating therapeutics that use the immune system to fight cancer. #PIIO
Pelotonia Institute for Immuno-Oncology
@OhioStatePIIO
. 9. 19.

🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…

OhioStatePIIO's tweet image. 🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 15.

#SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…

HaoYin20's tweet image. #SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 7. 18.

STOmicsDB #SpatialTranscriptomics repository Coding-free visualization & re-analysis of published ST datasets (if you have a specific question) 361 datasets 128 tissues 17 species db.cngb.org/stomics/ #NucAcidRes 2023 academic.oup.com/nar/article/52…

HaoYin20's tweet image. STOmicsDB #SpatialTranscriptomics repository Coding-free visualization & re-analysis of published ST datasets (if you have a specific question) 361 datasets 128 tissues 17 species db.cngb.org/stomics/ #NucAcidRes 2023 academic.oup.com/nar/article/52…
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
. 9. 4.

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. #LongReads #SingleCell #Spatialtranscriptomics #IsoSeq #PolyA @NatureComms nature.com/articles/s4146…

jsantoyo's tweet image. A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. #LongReads #SingleCell #Spatialtranscriptomics #IsoSeq #PolyA @NatureComms nature.com/articles/s4146…
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manoliskellis's profile picture. Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Manolis Kellis
@manoliskellis
2023. 4. 20.

Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…

manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 9. 1.

#SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…

HaoYin20's tweet image. #SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
. 3. 23.

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet

LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 10. 13.

#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…

HaoYin20's tweet image. #SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 10. 4.

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
. 7. 31.

#SpatialTranscriptomics #Aging #AcutePancreatitis 18- vs 3-mo ♂️🐭+caerulein #Visium @10xGenomics ⏫Inflammation in both Acinar & Stromal cells (even DEGs are similar b/w there 2 compartments) ↔️Major cellular pancreatic fractions Any age-related traits of inflamed islets? 😁…

HaoYin20's tweet image. #SpatialTranscriptomics #Aging #AcutePancreatitis 18- vs 3-mo ♂️🐭+caerulein #Visium @10xGenomics ⏫Inflammation in both Acinar & Stromal cells (even DEGs are similar b/w there 2 compartments) ↔️Major cellular pancreatic fractions Any age-related traits of inflamed islets? 😁…
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