#imswitch search results

After a long #roadtrip through the USA, the last conference on computational optics @HHMIJanelia is almost over. Just a quick last measurement before going to bed in ordr to check the deconv from @optrickster's lab using the @openuc2 #lightsheet using #ImSwitch. Works ☑️

beniroquai's tweet image. After a long #roadtrip through the USA, the last conference on computational optics @HHMIJanelia is almost over. Just a quick last measurement before going to bed in ordr to check the deconv from @optrickster's lab using the @openuc2 #lightsheet using #ImSwitch. Works ☑️

How many #lightsheet systems are out there that can be set up within 3 minutes (including booting up the laptop), fit into your hand luggage, and still are fun to operate? Thanks for the fun time today at the open hardware workshop @Chagas_AM et al.! :) #imswitch @xaviercasasm


Way too excited not to show this. Multi-well plate support in #ImSwitch inside @napari_imaging - coming soon. (Hint: I'm not a programmer and I still managed to implement it 😅, Thanks @xaviercasasm)

beniroquai's tweet image. Way too excited not to show this. Multi-well plate support in #ImSwitch inside @napari_imaging - coming soon. (Hint: I'm not a programmer and I still managed to implement it 😅, Thanks @xaviercasasm)

@OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch

beniroquai's tweet image. @OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch
beniroquai's tweet image. @OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch

Now member of #ImSwitch 🥳. Looking forward to contribute to this project ☺️

JakubDokulil's tweet image. Now member of #ImSwitch 🥳. Looking forward to contribute to this project ☺️

That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.

beniroquai's tweet image. That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.
beniroquai's tweet image. That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.

Talking about this? Runs on #imswitch and is fully open source using @OpenUc2 cubes 🙃

beniroquai's tweet image. Talking about this? Runs on #imswitch and is fully open source using @OpenUc2 cubes 🙃

Our @OpenUc2 slide scanner is alive. Thanks, @xaviercasasm and the #ImSwitch/#Napari team to make this great piece of software #opensource. Is anybody keen to do the image processing now? ^^ @haesleinhuepf 😇


New Autofocus Module inside #ImSwitch works just nice. New scope can be handed to @AgEggeling ✅ Great work @xaviercasasm

beniroquai's tweet image. New Autofocus Module inside #ImSwitch works just nice. New scope can be handed to @AgEggeling ✅ Great work @xaviercasasm

I don't want to be the #reviewer2 for this PR🙃 Lot's of new features for #ImSwitch are coming after this great hackathon organized by @nilnorl @lunduniversity. Features/Bugs - @napari-inspired Plugin Interface - Chatbot Integration @bioimageio - Headless - Docker Integration

beniroquai's tweet image. I don't want to be the #reviewer2 for this PR🙃
Lot's of new features for #ImSwitch are coming after this great hackathon organized by @nilnorl @lunduniversity. Features/Bugs
- @napari-inspired Plugin Interface
- Chatbot Integration @bioimageio 
- Headless 
- Docker Integration

Thanks. Current state of developments in #imswitch :) Open task: defocus, large image crop/tiling to simulate histostuff. Oh and backlash, random defocus and that kinda annoying things to make it a bit more realistic ;)


Cool! I'm getting a bit adventurous here with #IMSWITCH. Focussing works. Noise too. Now SIM? @HaoranWangDE ?


Why 1000 buttons if you can simply ask the microscope to do it for you? This is the @bioimageio chatbot coming up with an #autofocus algorithm for #imswitch using an @openuc2 microscope. Chat-Window is sped up, autofocus is real-time. I'm speechless with this speech-driven 🔬Wow!

First result from the @AI4LifeTeam Hackathon: @openUC2 speaks to @bioimageio's chatbot. And it can Stitch using #ASHLAR! The #ImSwitch-running @openuc2 microscope is running fully autonomously now 😇 Dang, so much #opensource in one post. Curious? More: openuc2.github.io/docs/Investiga…



First result from the @AI4LifeTeam Hackathon: @openUC2 speaks to @bioimageio's chatbot. And it can Stitch using #ASHLAR! The #ImSwitch-running @openuc2 microscope is running fully autonomously now 😇 Dang, so much #opensource in one post. Curious? More: openuc2.github.io/docs/Investiga…


So: We have a new member of the @OpenUc2 family. @DahengImaging cameras that works with #ImSwitch from @xaviercasasm/@IlariaTesta4 (see our fork) and #octopi from @hongquan_li/@PrakashLab . More information here github.com/openUC2/UC2-GI…. Get excited!

beniroquai's tweet image. So: We have a new member of the @OpenUc2 family. @DahengImaging cameras that works with #ImSwitch from @xaviercasasm/@IlariaTesta4  (see our fork) and #octopi from @hongquan_li/@PrakashLab . More information here github.com/openUC2/UC2-GI…. Get excited!

Digital Off-axis Holography was never easier! Documenting the last details and porting code to #ImSwitch for real-time reconstructions with your beloved @OpenUc2 cubes! Pack&go - Dublin, get ready! Btw: @cyclocrossguy we found your student @Leibniz_IPHT in case you miss him ;)

beniroquai's tweet image. Digital Off-axis Holography was never easier! Documenting the last details and porting code to #ImSwitch for real-time reconstructions with your beloved @OpenUc2 cubes! Pack&go - Dublin, get ready! Btw: @cyclocrossguy we found your student @Leibniz_IPHT  in case you miss him ;)

Ever wanted to have a go at building your own research instruments, but didn't know where to start? Or maybe you're just curious about what's possible? If so, we've got you covered! We're hosting a DIY microscopy workshop on March 21st. It's free and open to everyone! (1/5)

PickeringLab's tweet image. Ever wanted to have a go at building your own research instruments, but didn't know where to start? Or maybe you're just curious about what's possible?

If so, we've got you covered! We're hosting a DIY microscopy workshop on March 21st. It's free and open to everyone! (1/5)


Experimenting with the latest @Raspberry_Pi #Connect on our #ImSwitch driven microscopes from a far away. This is super cool! Check your cells when you're at home without actually moving to the lab - well or check what's inside the water using our #OASIS openuc2.com/oasis


Awww witch ♥RT@Gabrielaq29: Me hace falta @FGabriela_ para que me haga reír con sus locuras ☹/ #Imswitch


Experimenting with the latest @Raspberry_Pi #Connect on our #ImSwitch driven microscopes from a far away. This is super cool! Check your cells when you're at home without actually moving to the lab - well or check what's inside the water using our #OASIS openuc2.com/oasis


Talking about this? Runs on #imswitch and is fully open source using @OpenUc2 cubes 🙃

beniroquai's tweet image. Talking about this? Runs on #imswitch and is fully open source using @OpenUc2 cubes 🙃

We relied on available processing and acquisition frameworks such as the #naparisim from @AndreaBassi78 et al. Our #ImSwitch got a huge upgrade: A @napari-inspired plugin system: github.com/openUC2/imswit… This simplifies interaction with this 🔬 software suite for new-comers 4/n

github.com

GitHub - openUC2/imswitch-sim: This is a plugin that acquires and reconstructs SIM Images in...

This is a plugin that acquires and reconstructs SIM Images in ImSwitch - openUC2/imswitch-sim


I don't want to be the #reviewer2 for this PR🙃 Lot's of new features for #ImSwitch are coming after this great hackathon organized by @nilnorl @lunduniversity. Features/Bugs - @napari-inspired Plugin Interface - Chatbot Integration @bioimageio - Headless - Docker Integration

beniroquai's tweet image. I don't want to be the #reviewer2 for this PR🙃
Lot's of new features for #ImSwitch are coming after this great hackathon organized by @nilnorl @lunduniversity. Features/Bugs
- @napari-inspired Plugin Interface
- Chatbot Integration @bioimageio 
- Headless 
- Docker Integration

Why 1000 buttons if you can simply ask the microscope to do it for you? This is the @bioimageio chatbot coming up with an #autofocus algorithm for #imswitch using an @openuc2 microscope. Chat-Window is sped up, autofocus is real-time. I'm speechless with this speech-driven 🔬Wow!

First result from the @AI4LifeTeam Hackathon: @openUC2 speaks to @bioimageio's chatbot. And it can Stitch using #ASHLAR! The #ImSwitch-running @openuc2 microscope is running fully autonomously now 😇 Dang, so much #opensource in one post. Curious? More: openuc2.github.io/docs/Investiga…



First result from the @AI4LifeTeam Hackathon: @openUC2 speaks to @bioimageio's chatbot. And it can Stitch using #ASHLAR! The #ImSwitch-running @openuc2 microscope is running fully autonomously now 😇 Dang, so much #opensource in one post. Curious? More: openuc2.github.io/docs/Investiga…


Now member of #ImSwitch 🥳. Looking forward to contribute to this project ☺️

JakubDokulil's tweet image. Now member of #ImSwitch 🥳. Looking forward to contribute to this project ☺️

After a long #roadtrip through the USA, the last conference on computational optics @HHMIJanelia is almost over. Just a quick last measurement before going to bed in ordr to check the deconv from @optrickster's lab using the @openuc2 #lightsheet using #ImSwitch. Works ☑️

beniroquai's tweet image. After a long #roadtrip through the USA, the last conference on computational optics @HHMIJanelia is almost over. Just a quick last measurement before going to bed in ordr to check the deconv from @optrickster's lab using the @openuc2 #lightsheet using #ImSwitch. Works ☑️

That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.

beniroquai's tweet image. That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.
beniroquai's tweet image. That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.

And here comes an update on #imswitch that will soon will be merged upstream. doi.org/10.6084/m9.fig… Join us at #FOM2024. There will be an @OpenUc2 #lightsheet demonstrating the power of #opensource soft- and hardware 😍🔬 tomorrow's poster session will be your chance :)

Now being developed by @jacopo_abramo, and also used by @OpenUc2 microscopes! Super cool project!



@OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch

beniroquai's tweet image. @OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch
beniroquai's tweet image. @OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch

And here comes the docs for the hackathon on how to access #ImSwitch using #chatgpt and stuff - #tobecontinued! Oh, and of course all codes are available here: github.com/openUC2/Hackat… Happy chatting!

github.com

GitHub - openUC2/Hackathon-UC2-LLM: These are some information on how we want to connect the LLM...

These are some information on how we want to connect the LLM world to smart microscopy - openUC2/Hackathon-UC2-LLM

My slides about #BioImageAnalysis with the Help of LLMs I presented today at the #IPHT Jena are #openaccess 🔓 I focused on #biabob (using #chatgpt, #gemini, #mistral and #llama), vision models 🤓 and #blablado 🗣️ Big thanks @beniroquai for hosting me! zenodo.org/records/108153…



If llms do not help anymore, use @HeintzmannLab's #ARoptics to eventually control @OpenUc2 or @napari? Amazing stuff we learned in our hackathon with @haesleinhuepf. Easy int connect llms to #ImSwitch

beniroquai's tweet image. If llms do not help anymore, use @HeintzmannLab's #ARoptics to eventually control @OpenUc2 or @napari? Amazing stuff we learned in our hackathon with @haesleinhuepf. Easy int connect llms to #ImSwitch

#Smartmicroscopy Anyone? We have a mission! Today at the @Leibniz_IPHT Hackathon with our special Guest from @UniLeipzig, @haesleinhuepf! I'm really looking forward to solve this with @OpenUc2 and #LLM in #microscopy 😇 #microscopyescapegame

beniroquai's tweet image. #Smartmicroscopy Anyone? We have a mission! Today at the @Leibniz_IPHT Hackathon with our special Guest from @UniLeipzig, @haesleinhuepf! I'm really looking forward to solve this with @OpenUc2 and #LLM in #microscopy 😇 #microscopyescapegame


Digital Off-axis Holography was never easier! Documenting the last details and porting code to #ImSwitch for real-time reconstructions with your beloved @OpenUc2 cubes! Pack&go - Dublin, get ready! Btw: @cyclocrossguy we found your student @Leibniz_IPHT in case you miss him ;)

beniroquai's tweet image. Digital Off-axis Holography was never easier! Documenting the last details and porting code to #ImSwitch for real-time reconstructions with your beloved @OpenUc2 cubes! Pack&go - Dublin, get ready! Btw: @cyclocrossguy we found your student @Leibniz_IPHT  in case you miss him ;)

Ever wanted to have a go at building your own research instruments, but didn't know where to start? Or maybe you're just curious about what's possible? If so, we've got you covered! We're hosting a DIY microscopy workshop on March 21st. It's free and open to everyone! (1/5)

PickeringLab's tweet image. Ever wanted to have a go at building your own research instruments, but didn't know where to start? Or maybe you're just curious about what's possible?

If so, we've got you covered! We're hosting a DIY microscopy workshop on March 21st. It's free and open to everyone! (1/5)


🚨🚨🚨Are you looking for an adventurous project in the capital of 🔬 as a PhD student to bring cutting-edge microscopy to the world? Come to Jena & influence our new at the @Leibniz_IPHT & work with @openuc2 /#imswitch: leibniz-ipht.de/de/institut/ka…


Cool! I'm getting a bit adventurous here with #IMSWITCH. Focussing works. Noise too. Now SIM? @HaoranWangDE ?


Thanks. Current state of developments in #imswitch :) Open task: defocus, large image crop/tiling to simulate histostuff. Oh and backlash, random defocus and that kinda annoying things to make it a bit more realistic ;)


Highly recommendable blog post by the Andrew Erickson from Helsinki about the @OpenUc2 hackathon last Friday/Saturday: erickson-lab.com/post/erickson-… This was fun! And I'm still so tired! :D Result: UC2 scanner + #imswitch + #ASHLAR + @frauzufall (yeah..flatfielding comes later ^^)

beniroquai's tweet image. Highly recommendable blog post by the Andrew Erickson from Helsinki about the @OpenUc2 hackathon last Friday/Saturday: erickson-lab.com/post/erickson-… This was fun! And I'm still so tired! :D

Result: UC2 scanner + #imswitch + #ASHLAR + @frauzufall  (yeah..flatfielding comes later ^^)

openUC2remote - Use @ImJoy to access the hardware control and image streaming from #ImSwitch


For those who are looking for the microeye code, it's all open-source: github.com/samhitech/micr… by Mohammad Nour Alsamsam, et Al. Cc: @HohlbeinLab here is the #imswitch implementation: github.com/openUC2/ImSwit…


After a long #roadtrip through the USA, the last conference on computational optics @HHMIJanelia is almost over. Just a quick last measurement before going to bed in ordr to check the deconv from @optrickster's lab using the @openuc2 #lightsheet using #ImSwitch. Works ☑️

beniroquai's tweet image. After a long #roadtrip through the USA, the last conference on computational optics @HHMIJanelia is almost over. Just a quick last measurement before going to bed in ordr to check the deconv from @optrickster's lab using the @openuc2 #lightsheet using #ImSwitch. Works ☑️

@OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch

beniroquai's tweet image. @OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch
beniroquai's tweet image. @OpenUc2 goes @ucddublin. What a great workshop organized by @Niamh_deBurca and @PickeringLab. Very happy to be part of this open DIY bubble. New #lightsheet is up and running in a box powered by #imswitch

Way too excited not to show this. Multi-well plate support in #ImSwitch inside @napari_imaging - coming soon. (Hint: I'm not a programmer and I still managed to implement it 😅, Thanks @xaviercasasm)

beniroquai's tweet image. Way too excited not to show this. Multi-well plate support in #ImSwitch inside @napari_imaging - coming soon. (Hint: I'm not a programmer and I still managed to implement it 😅, Thanks @xaviercasasm)

Talking about this? Runs on #imswitch and is fully open source using @OpenUc2 cubes 🙃

beniroquai's tweet image. Talking about this? Runs on #imswitch and is fully open source using @OpenUc2 cubes 🙃

New Autofocus Module inside #ImSwitch works just nice. New scope can be handed to @AgEggeling ✅ Great work @xaviercasasm

beniroquai's tweet image. New Autofocus Module inside #ImSwitch works just nice. New scope can be handed to @AgEggeling ✅ Great work @xaviercasasm

I don't want to be the #reviewer2 for this PR🙃 Lot's of new features for #ImSwitch are coming after this great hackathon organized by @nilnorl @lunduniversity. Features/Bugs - @napari-inspired Plugin Interface - Chatbot Integration @bioimageio - Headless - Docker Integration

beniroquai's tweet image. I don't want to be the #reviewer2 for this PR🙃
Lot's of new features for #ImSwitch are coming after this great hackathon organized by @nilnorl @lunduniversity. Features/Bugs
- @napari-inspired Plugin Interface
- Chatbot Integration @bioimageio 
- Headless 
- Docker Integration

That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.

beniroquai's tweet image. That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.
beniroquai's tweet image. That was a great #AQLM2024, and this time the @openUC2 #LISH worked beautifully! #ImSwitch, @opensource ftw! Now: 8h Bus ride to Montreal to @oshwassociation con.

So: We have a new member of the @OpenUc2 family. @DahengImaging cameras that works with #ImSwitch from @xaviercasasm/@IlariaTesta4 (see our fork) and #octopi from @hongquan_li/@PrakashLab . More information here github.com/openUC2/UC2-GI…. Get excited!

beniroquai's tweet image. So: We have a new member of the @OpenUc2 family. @DahengImaging cameras that works with #ImSwitch from @xaviercasasm/@IlariaTesta4  (see our fork) and #octopi from @hongquan_li/@PrakashLab . More information here github.com/openUC2/UC2-GI…. Get excited!

Highly recommendable blog post by the Andrew Erickson from Helsinki about the @OpenUc2 hackathon last Friday/Saturday: erickson-lab.com/post/erickson-… This was fun! And I'm still so tired! :D Result: UC2 scanner + #imswitch + #ASHLAR + @frauzufall (yeah..flatfielding comes later ^^)

beniroquai's tweet image. Highly recommendable blog post by the Andrew Erickson from Helsinki about the @OpenUc2 hackathon last Friday/Saturday: erickson-lab.com/post/erickson-… This was fun! And I'm still so tired! :D

Result: UC2 scanner + #imswitch + #ASHLAR + @frauzufall  (yeah..flatfielding comes later ^^)

Now member of #ImSwitch 🥳. Looking forward to contribute to this project ☺️

JakubDokulil's tweet image. Now member of #ImSwitch 🥳. Looking forward to contribute to this project ☺️

Digital Off-axis Holography was never easier! Documenting the last details and porting code to #ImSwitch for real-time reconstructions with your beloved @OpenUc2 cubes! Pack&go - Dublin, get ready! Btw: @cyclocrossguy we found your student @Leibniz_IPHT in case you miss him ;)

beniroquai's tweet image. Digital Off-axis Holography was never easier! Documenting the last details and porting code to #ImSwitch for real-time reconstructions with your beloved @OpenUc2 cubes! Pack&go - Dublin, get ready! Btw: @cyclocrossguy we found your student @Leibniz_IPHT  in case you miss him ;)

Ever wanted to have a go at building your own research instruments, but didn't know where to start? Or maybe you're just curious about what's possible? If so, we've got you covered! We're hosting a DIY microscopy workshop on March 21st. It's free and open to everyone! (1/5)

PickeringLab's tweet image. Ever wanted to have a go at building your own research instruments, but didn't know where to start? Or maybe you're just curious about what's possible?

If so, we've got you covered! We're hosting a DIY microscopy workshop on March 21st. It's free and open to everyone! (1/5)


If llms do not help anymore, use @HeintzmannLab's #ARoptics to eventually control @OpenUc2 or @napari? Amazing stuff we learned in our hackathon with @haesleinhuepf. Easy int connect llms to #ImSwitch

beniroquai's tweet image. If llms do not help anymore, use @HeintzmannLab's #ARoptics to eventually control @OpenUc2 or @napari? Amazing stuff we learned in our hackathon with @haesleinhuepf. Easy int connect llms to #ImSwitch

#Smartmicroscopy Anyone? We have a mission! Today at the @Leibniz_IPHT Hackathon with our special Guest from @UniLeipzig, @haesleinhuepf! I'm really looking forward to solve this with @OpenUc2 and #LLM in #microscopy 😇 #microscopyescapegame

beniroquai's tweet image. #Smartmicroscopy Anyone? We have a mission! Today at the @Leibniz_IPHT Hackathon with our special Guest from @UniLeipzig, @haesleinhuepf! I'm really looking forward to solve this with @OpenUc2 and #LLM in #microscopy 😇 #microscopyescapegame


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