First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅

jo_rainer's tweet image. First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅

the @GNPS_UCSD sticker found its place - right next to #xcms and #MSnbase 👍 #MetSoc2018

jo_rainer's tweet image. the @GNPS_UCSD sticker found its place - right next to #xcms and #MSnbase 👍 #MetSoc2018

Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0

jo_rainer's tweet image. Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0

Paste my 3 new stickers thanks to @lgatt0 🙏👨‍💻! #MSnbase #mzR and #RforMassSpec

KMissault's tweet image. Paste my 3 new stickers thanks to @lgatt0 🙏👨‍💻! #MSnbase #mzR and #RforMassSpec

The simple workflow for mass spec data handling with #MSnbase and LC-MS preprocessing with #xcms has now a DOI: doi.org/10.5281/zenodo… Source available on github github.com/jorainer/metab…


...just stumbled on #MSnbase by @jo_rainer ...seems like exactly what I was looking for! 🤞🙏


About to perform centroiding of 24316 profile mzML files with #MSnbase in #Rstats 😎


. Forgot to mention that centroiding was done in #rstats using the #MSnbase package 😎


Thanks again to the organizers of the @denbiOffice #metaRbolomics hackathon @sneumannoffice . Was fun, lot's of ideas for future improvements in e.g. #MSnbase or #xcms and nice collaborative work and interactions


IMPLICATIONS ➡️ 𝗣𝗢𝗠𝗔 is based on the standardized #MSnbase R package architecture, developed by Laurent Gatto (@lgatt0) in October 2010, to achieve the maximum flexibility and reproducibility and makes POMA compatible with pre-existing @Bioconductor packages.


Will show recent updates to #xcms and #MSnbase (with @lgatt0 and @sneumannoffice) on poster 496 next week at the #MetSoc2019 conference in The Hague! I'll also bring some #stickers 😉


My #MetSoc2019 poster on updates to @bioconductor packages #xcms and #MSnbase is available here doi.org/10.5281/zenodo… - or if you want to meet me in person: it's poster number 496 - I'll also have some stickers 😉


Matching can be done with #MSnbase package, working on a better/faster way in a new Spectra package. Databases will come too, just not enough time for all 😅. Will present some stuff at #SWEMSA2019 in Munich


My contribution to the "Metabolomics Data Analysis with XCMS and Galaxy" workshop at @MetSoc2018 is available: github.com/jotsetung/meta…. It describes MS data handling with @lgatto's #MSnbase and LC-MS preprocessing with #xcms updated user interface.


On my way to the #metaRbolomics in Wittenberg. Looking forward to interesting discussions and extending functionality of #xcms and #MSnbase


Keeping @sneumannoffice , @lgatt0 and @sebastiangibb busy: two pull requests for #MSnbase, one for #mzR and some changes in #xcms @Bioconductor packages - all in one day 😅


about to present #MSnbase MS data handling and LC-MS preprocessing using #xcms at #MetSoc2018. get he data, slides and more from github.com/jotsetung/meta…


Thanks! But #MSnbase is actually from @lgatt0 with contributions from @sebastiangibb and myself.


We stay in the drylab with @jo_rainer from @EURAC! He has an open position in #computational #metabolomics focusing on methods facilitating handling, processing and annotation of #metabolomics data

human_dn's tweet image. We stay in the drylab with @jo_rainer from @EURAC! He has an open position in #computational #metabolomics focusing on methods facilitating handling, processing and annotation of #metabolomics data


The simple workflow for mass spec data handling with #MSnbase and LC-MS preprocessing with #xcms has now a DOI: doi.org/10.5281/zenodo… Source available on github github.com/jorainer/metab…


First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅

jo_rainer's tweet image. First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅

IMPLICATIONS ➡️ 𝗣𝗢𝗠𝗔 is based on the standardized #MSnbase R package architecture, developed by Laurent Gatto (@lgatt0) in October 2010, to achieve the maximum flexibility and reproducibility and makes POMA compatible with pre-existing @Bioconductor packages.


Here is one for #workingfromhome #massspec data folks - what are the chances of one being able to extract a single scan (mz and intensity pairs) from a mzML file to a .csv? #msnbase is great but only writes back to mzML!


The package is actually the #MSnbase package from @lgatt0 (although I added the respective functionality 😁). Nice that it's useful for you!


Matching can be done with #MSnbase package, working on a better/faster way in a new Spectra package. Databases will come too, just not enough time for all 😅. Will present some stuff at #SWEMSA2019 in Munich


Paste my 3 new stickers thanks to @lgatt0 🙏👨‍💻! #MSnbase #mzR and #RforMassSpec

KMissault's tweet image. Paste my 3 new stickers thanks to @lgatt0 🙏👨‍💻! #MSnbase #mzR and #RforMassSpec

My #MetSoc2019 poster on updates to @bioconductor packages #xcms and #MSnbase is available here doi.org/10.5281/zenodo… - or if you want to meet me in person: it's poster number 496 - I'll also have some stickers 😉


Will show recent updates to #xcms and #MSnbase (with @lgatt0 and @sneumannoffice) on poster 496 next week at the #MetSoc2019 conference in The Hague! I'll also bring some #stickers 😉


Thanks! But #MSnbase is actually from @lgatt0 with contributions from @sebastiangibb and myself.


...just stumbled on #MSnbase by @jo_rainer ...seems like exactly what I was looking for! 🤞🙏


Thanks again to the organizers of the @denbiOffice #metaRbolomics hackathon @sneumannoffice . Was fun, lot's of ideas for future improvements in e.g. #MSnbase or #xcms and nice collaborative work and interactions


Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0

jo_rainer's tweet image. Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0

Sorry to hear that. Best wishes! And yes, let's catch up next week - I'll promote the new backends of #MSnbase ☺️


On my way to the #metaRbolomics in Wittenberg. Looking forward to interesting discussions and extending functionality of #xcms and #MSnbase


. Forgot to mention that centroiding was done in #rstats using the #MSnbase package 😎


Completely agree with Gavin. Some stuff might be possible with current #xcms and #MSnbase packages - but probably some more work needed - am working on that


"#msnbase" に一致する結果はありません

the @GNPS_UCSD sticker found its place - right next to #xcms and #MSnbase 👍 #MetSoc2018

jo_rainer's tweet image. the @GNPS_UCSD sticker found its place - right next to #xcms and #MSnbase 👍 #MetSoc2018

Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0

jo_rainer's tweet image. Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0

First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅

jo_rainer's tweet image. First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅

Paste my 3 new stickers thanks to @lgatt0 🙏👨‍💻! #MSnbase #mzR and #RforMassSpec

KMissault's tweet image. Paste my 3 new stickers thanks to @lgatt0 🙏👨‍💻! #MSnbase #mzR and #RforMassSpec

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