#msnbase 検索結果
First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅
Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0
The simple workflow for mass spec data handling with #MSnbase and LC-MS preprocessing with #xcms has now a DOI: doi.org/10.5281/zenodo… Source available on github github.com/jorainer/metab…
...just stumbled on #MSnbase by @jo_rainer ...seems like exactly what I was looking for! 🤞🙏
Thanks again to the organizers of the @denbiOffice #metaRbolomics hackathon @sneumannoffice . Was fun, lot's of ideas for future improvements in e.g. #MSnbase or #xcms and nice collaborative work and interactions
IMPLICATIONS ➡️ 𝗣𝗢𝗠𝗔 is based on the standardized #MSnbase R package architecture, developed by Laurent Gatto (@lgatt0) in October 2010, to achieve the maximum flexibility and reproducibility and makes POMA compatible with pre-existing @Bioconductor packages.
Will show recent updates to #xcms and #MSnbase (with @lgatt0 and @sneumannoffice) on poster 496 next week at the #MetSoc2019 conference in The Hague! I'll also bring some #stickers 😉
My #MetSoc2019 poster on updates to @bioconductor packages #xcms and #MSnbase is available here doi.org/10.5281/zenodo… - or if you want to meet me in person: it's poster number 496 - I'll also have some stickers 😉
Matching can be done with #MSnbase package, working on a better/faster way in a new Spectra package. Databases will come too, just not enough time for all 😅. Will present some stuff at #SWEMSA2019 in Munich
My contribution to the "Metabolomics Data Analysis with XCMS and Galaxy" workshop at @MetSoc2018 is available: github.com/jotsetung/meta…. It describes MS data handling with @lgatto's #MSnbase and LC-MS preprocessing with #xcms updated user interface.
On my way to the #metaRbolomics in Wittenberg. Looking forward to interesting discussions and extending functionality of #xcms and #MSnbase
Keeping @sneumannoffice , @lgatt0 and @sebastiangibb busy: two pull requests for #MSnbase, one for #mzR and some changes in #xcms @Bioconductor packages - all in one day 😅
about to present #MSnbase MS data handling and LC-MS preprocessing using #xcms at #MetSoc2018. get he data, slides and more from github.com/jotsetung/meta…
Great to have @lgatt0 presentation about #MSnbase many great questions at may Institute @olgavitek. I should watch it again!! youtu.be/TyRJOrFfQus
youtube.com
YouTube
May Institute 2020 Online - Laurent Gatto: MSnbase design principles...
Thanks! But #MSnbase is actually from @lgatt0 with contributions from @sebastiangibb and myself.
... and you could also have a look at github.com/jorainer/metab… for a small workshop including MS data #centroiding with #MSnbase
github.com
GitHub - jorainer/metabolomics2018: Workshop illustrating mass spectrometry data analysis in R and...
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data. - jorainer/metabolomics2018
One of the architects of #RforMassSpectrometry @rstatstweet #xcms #MSnbase #Spectra @lgatt0 @sneumannoffice
We stay in the drylab with @jo_rainer from @EURAC! He has an open position in #computational #metabolomics focusing on methods facilitating handling, processing and annotation of #metabolomics data
The simple workflow for mass spec data handling with #MSnbase and LC-MS preprocessing with #xcms has now a DOI: doi.org/10.5281/zenodo… Source available on github github.com/jorainer/metab…
First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅
Great to have @lgatt0 presentation about #MSnbase many great questions at may Institute @olgavitek. I should watch it again!! youtu.be/TyRJOrFfQus
youtube.com
YouTube
May Institute 2020 Online - Laurent Gatto: MSnbase design principles...
IMPLICATIONS ➡️ 𝗣𝗢𝗠𝗔 is based on the standardized #MSnbase R package architecture, developed by Laurent Gatto (@lgatt0) in October 2010, to achieve the maximum flexibility and reproducibility and makes POMA compatible with pre-existing @Bioconductor packages.
Here is one for #workingfromhome #massspec data folks - what are the chances of one being able to extract a single scan (mz and intensity pairs) from a mzML file to a .csv? #msnbase is great but only writes back to mzML!
The package is actually the #MSnbase package from @lgatt0 (although I added the respective functionality 😁). Nice that it's useful for you!
Matching can be done with #MSnbase package, working on a better/faster way in a new Spectra package. Databases will come too, just not enough time for all 😅. Will present some stuff at #SWEMSA2019 in Munich
My #MetSoc2019 poster on updates to @bioconductor packages #xcms and #MSnbase is available here doi.org/10.5281/zenodo… - or if you want to meet me in person: it's poster number 496 - I'll also have some stickers 😉
Will show recent updates to #xcms and #MSnbase (with @lgatt0 and @sneumannoffice) on poster 496 next week at the #MetSoc2019 conference in The Hague! I'll also bring some #stickers 😉
... and you could also have a look at github.com/jorainer/metab… for a small workshop including MS data #centroiding with #MSnbase
github.com
GitHub - jorainer/metabolomics2018: Workshop illustrating mass spectrometry data analysis in R and...
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data. - jorainer/metabolomics2018
Thanks! But #MSnbase is actually from @lgatt0 with contributions from @sebastiangibb and myself.
...just stumbled on #MSnbase by @jo_rainer ...seems like exactly what I was looking for! 🤞🙏
Thanks again to the organizers of the @denbiOffice #metaRbolomics hackathon @sneumannoffice . Was fun, lot's of ideas for future improvements in e.g. #MSnbase or #xcms and nice collaborative work and interactions
Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0
Sorry to hear that. Best wishes! And yes, let's catch up next week - I'll promote the new backends of #MSnbase ☺️
On my way to the #metaRbolomics in Wittenberg. Looking forward to interesting discussions and extending functionality of #xcms and #MSnbase
Current status of 'AnnotatedSpectrum' for #MSnbase at #metaRbolomics - still some stuff to agree upon 😁 @lgatt0
First time in my office today (since March) to pick up stuff - most importantly: #MSnbase and #xcms stickers 😅
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