#seqcode search results
We showed that #methane producing arthropods (termites, cockroaches, millipedes, and some beetles) harbor a great number of so far undescribed lineages of archaea (mostly methanogens). We used #SeqCode to describe 33 new species and 15 new genera. 2/8
Presenting our taxonomic reclassification of the genus Methanobrevibacter into 8+1 genera based on phylogenomics data at #vaam. It's already done based on #seqcode, but now we are aiming to validly publish our genera under ICNP rules. #microbiology #taxonomy #vaam2024
You can register your old named MAGs in the #seqcode to get a validly published name for your organism #isme18
Exciting discussion about the "Future of Microbial Taxonomy Under the #SeqCode" at #ISME18 right now 😀
New species of #archaea from arthropods described under the #SeqCode have been finally approved! Since genomes were used as type material for species description, many taxa previously known only from metagenomics now have official species protologues. doi.org/10.57973/seqco…
Microbe of the Year 2024 at #vaam conference is Ca. Electronema sp. Discovery based on "failed" experiment showed how bacteria transfer electrons via cm long filaments in sediments 🤓. The species described with #seqcode based on genome. #microbiology #vaam2024
🧬 Els científics revelaven un nou sistema per a nomenar la majoria dels microorganismes del món #SeqCode #Microorganisms #Prokaryotes dri.edu/scientists-unv…
"Rule 30" is a challenge for microbiology as most organisms have not been cultivated and many of them might never be! We need the #seqcode to allow tracking knowledge by allowing genomes as type material #GenomesMicrobiome22
Background material for the UnCode workshop is now available for registered participants. Looking forward to some great discussion. @NCMR_Pune @PhilHugenholtz @ramonibus @BISMiS_ @fanus_venter @IcspEb #SeqCode #Uncultivated
Your word could help us to shape the future of taxonomy. Learn more about the #SeqCode and share your ideas with us at the #SeqCode Information Session on August 16, 13:15-13:45 CEST, Auditorium A. #ISME18
Even if you have an isolate, it is not always possible to validly publish it as a new species, as national regulations might prohibit free access to the cultures. #SeqCode provides a solution by assigning species names without requiring culture deposition. sciencedirect.com/science/articl…
Are you coming to #ISME18 next week? Here is your chance to speak about the Future of Microbial Taxonomy Under the #SeqCode. Save the date: August 15th, 18:00 CEST. Great panelists and topics are guaranteed @ISME_microbes @PhilHugenholtz @_lrr_ @1031kentakai @archaearama
Get your name validated through the #seqcode initiative #GenomesMicrobiome22 disc-genomics.uibk.ac.at/seqcode/
A major hurdle to publishing a new prokaryotic #species is a fact that one need to deposit its culture to two collections. #seqcode is a way to overcome the problem using genome sequence as a type material and not the culture. #microbiology #taxonomy onlinelibrary.wiley.com/doi/10.1002/ml…
Promoting the #seqcode for the description of Mesorhizobium species @fanus_venter @SteenkampEmma @Fabiteam1 @UPnasagric @seq_code
Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov. #microbiology #bacteria #SeqCode sciencedirect.com/science/articl…
Proposal of Patescibacterium as the type genus of the phylum Patescibacteriota with Patescibacterium danicum as the type species under #SeqCode #microbiology #taxonomy @ISMEComms @ISME_microbes @seq_code academic.oup.com/ismecommun/art…
Cheers to a great kick off for #ISME19 in #capetown. Excited for the plenary tomorrow morning followed by poster sessions, talks, and afternoon round tables. Hard to choose between the #seqcode RT and the #darkoxygen RT. Where will you be? #sciencetwitter #presspass #isme
Two different names proposed for Asgard archaea phylum, Promethearchaeota (#ICNP) and Asgardarchaeota (#SeqCode). It shows how different rules govern prokaryotic #taxonomy. #archaea #eukaryotes #microbiology tiny.cc/83m0zz tiny.cc/63m0zz
The type species Asgardarchaeum abyssi is the anchor for the phylum Asgardarchaeota, which are the closest relatives of #eukaryotes. Since no pure culture is available now, the species and thus the phylum are described under the #SeqCode initiative. sciencedirect.com/science/articl…
With this, we built a custom db AND improved taxonomic resolution within comm profiles. Some of them were #unnamed and #novel lineages, some of which we proposed new names with @m_chuvochina and submitted to #SeqCode! Further , we separated them into brackish/marine ecotypes!
Screening 54 water samples (short & long read #ONT sequencing) across brackish to marine sites, @aprabhu90 - recovered nearly 2,500 genomes - proposed new taxon names (#SeqCode) - created a custom DB for genome-based community profiling (with improved taxonomic resolution!)
A collaborative effort to preserve nomenclatural & taxonomic congruence: "Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum #Asgardarchaeota in accordance with the #SeqCode" led by @DanielTamarit & @Ettema_lab
Presenting our taxonomic reclassification of the genus Methanobrevibacter into 8+1 genera based on phylogenomics data at #vaam. It's already done based on #seqcode, but now we are aiming to validly publish our genera under ICNP rules. #microbiology #taxonomy #vaam2024
Microbe of the Year 2024 at #vaam conference is Ca. Electronema sp. Discovery based on "failed" experiment showed how bacteria transfer electrons via cm long filaments in sediments 🤓. The species described with #seqcode based on genome. #microbiology #vaam2024
Big thanks to #SeqCode curators @m_chuvochina, @_lrr_ , and @marike_palmer for all the hard work they did! SeqCode demonstrates why species descriptions based on axenic cultures have become obsolete. Read more nature.com/articles/s4156… sciencedirect.com/science/articl…
nature.com
SeqCode: a nomenclatural code for prokaryotes described from sequence data
Nature Microbiology - SeqCode is the result of a community effort to unify nomenclature for uncultured and cultured prokaryotes using genome sequences.
New species of #archaea from arthropods described under the #SeqCode have been finally approved! Since genomes were used as type material for species description, many taxa previously known only from metagenomics now have official species protologues. doi.org/10.57973/seqco…
Even if you have an isolate, it is not always possible to validly publish it as a new species, as national regulations might prohibit free access to the cultures. #SeqCode provides a solution by assigning species names without requiring culture deposition. sciencedirect.com/science/articl…
The developmpent of #seqcode requires participation. Archaea and bacteria cannot name themselves 😄 #taxonomy #microbiology #nomenclature sciencedirect.com/science/articl…
A major hurdle to publishing a new prokaryotic #species is a fact that one need to deposit its culture to two collections. #seqcode is a way to overcome the problem using genome sequence as a type material and not the culture. #microbiology #taxonomy onlinelibrary.wiley.com/doi/10.1002/ml…
Ideally, you also validate taxonomic names under the #SeqCode - using the SeqCode Registry, a registration web portal through which names and nomenclatural types are registered, validated and linked to metadata. More info: isme-microbes.org/seqcode-inform…
Dr Annie Tan (Uni Malaya) updating us at #MSM2023 on the latest developments in prokaryotic systematics. Here, she promotes #SeqCode as part of the next-gen nomenclatural code which uses DNA sequences (instead of just pure cultures) for naming new species.
We showed that #methane producing arthropods (termites, cockroaches, millipedes, and some beetles) harbor a great number of so far undescribed lineages of archaea (mostly methanogens). We used #SeqCode to describe 33 new species and 15 new genera. 2/8
#SeqCode is the way to name an uncultured prokaryotic majority. Excellent lecture by William Whitman as an introduction to the topic with updates on the evolving system of #taxonomy. Future is genomic.
Prof. Whitman will be giving an update on the @seq_code at our next #BISMiSLive session this Saturday. Make sure you register at shorturl.at/cqrG6 @Leibniz_DSMZ_en @BccmCollections @CCUG_Sweden @CABI_Microbe @ICSP_news @ari_pune #TaxonomyIsFun
Alkaliphilic aceticlastic #methanogen isolated from mud volcano. #seqcode #taxonomy #methane frontiersin.org/articles/10.33…
frontiersin.org
Frontiers | Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methan...
Methanogenic enrichments with acetate from a soda lake and a terrestrial mud volcano allowed for the first time to obtain highly purified cultures of alkalip...
We showed that #methane producing arthropods (termites, cockroaches, millipedes, and some beetles) harbor a great number of so far undescribed lineages of archaea (mostly methanogens). We used #SeqCode to describe 33 new species and 15 new genera. 2/8
Presenting our taxonomic reclassification of the genus Methanobrevibacter into 8+1 genera based on phylogenomics data at #vaam. It's already done based on #seqcode, but now we are aiming to validly publish our genera under ICNP rules. #microbiology #taxonomy #vaam2024
New species of #archaea from arthropods described under the #SeqCode have been finally approved! Since genomes were used as type material for species description, many taxa previously known only from metagenomics now have official species protologues. doi.org/10.57973/seqco…
Microbe of the Year 2024 at #vaam conference is Ca. Electronema sp. Discovery based on "failed" experiment showed how bacteria transfer electrons via cm long filaments in sediments 🤓. The species described with #seqcode based on genome. #microbiology #vaam2024
🧬 Els científics revelaven un nou sistema per a nomenar la majoria dels microorganismes del món #SeqCode #Microorganisms #Prokaryotes dri.edu/scientists-unv…
Still spots in the first row for the #seqcode round table #isme18. Get official names for all your MAGs!
Even if you have an isolate, it is not always possible to validly publish it as a new species, as national regulations might prohibit free access to the cultures. #SeqCode provides a solution by assigning species names without requiring culture deposition. sciencedirect.com/science/articl…
A major hurdle to publishing a new prokaryotic #species is a fact that one need to deposit its culture to two collections. #seqcode is a way to overcome the problem using genome sequence as a type material and not the culture. #microbiology #taxonomy onlinelibrary.wiley.com/doi/10.1002/ml…
You can register your old named MAGs in the #seqcode to get a validly published name for your organism #isme18
Exciting discussion about the "Future of Microbial Taxonomy Under the #SeqCode" at #ISME18 right now 😀
Background material for the UnCode workshop is now available for registered participants. Looking forward to some great discussion. @NCMR_Pune @PhilHugenholtz @ramonibus @BISMiS_ @fanus_venter @IcspEb #SeqCode #Uncultivated
Excitement is building up for the #SeqCode debate between @fanus_venter, Henrik Christensen, Joerg Overmann & William Whitman at #BISMiSLive. Register at us02web.zoom.us/webinar/regist… @Leibniz_DSMZ_en @LPSN10 @MicrobioSoc @ISME_microbes @NCMR_Pune @Fabiteam1 @marike_palmer
Dear all, we are pleased to announce the first official list of #SeqCode validly published names! disc-genomics.uibk.ac.at/seqcode/names?… #SeqCode @ISME_microbes
Are you coming to #ISME18 next week? Here is your chance to speak about the Future of Microbial Taxonomy Under the #SeqCode. Save the date: August 15th, 18:00 CEST. Great panelists and topics are guaranteed @ISME_microbes @PhilHugenholtz @_lrr_ @1031kentakai @archaearama
Get your name validated through the #seqcode initiative #GenomesMicrobiome22 disc-genomics.uibk.ac.at/seqcode/
"Rule 30" is a challenge for microbiology as most organisms have not been cultivated and many of them might never be! We need the #seqcode to allow tracking knowledge by allowing genomes as type material #GenomesMicrobiome22
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