#codonusage search results
Welcome to the world of codons. Excited to attend my first PhD conference on codon usage. #EMBO_CU22 #codonusage
#CodonUsage peeps we love CodonW but parsing the output codon table is onerous. I wrote a python program that computes the relative synonymous codon Usage (RSCU) of each CDS and outputs a clean analysis-ready 61 x n (cds) table. github.com/rhondene/Codon…
Yi Liu kicking off the 2nd edition of the #CodonUsage workshop in beautiful #Edinburgh! It's all about building a community for scientists from incredibly diverse backgrounds. Looking forward to a fantastic lineup this year!
While the #RNA world is streaming towards Edinburgh, I'm on the plane back home after a fantastic 2nd edition of the #CodonUsage workshop! I'm incredibly proud to still be part of such a scientifically diverse community & cannot wait to see all the amazing science emerging soon!
Yi Liu takes us on a deep dive into the influence of #codonusage on transcription and translation.. implications for troubleshooting heterologous expression‽ #fungal19 #UhOh
#Codonusage bias and #purifyingselection identified in Cirrhinus reba #mitogenome bsmiab.org/jabet/178-1652…
Which Yeasts are Xylose Beasts? New work from myself @RokasLab @HittingerLab @KtlnFisher @DOpulente & UG trainees shows how #codonusage is better than gene content at predicting xylose catabolism - which is critical in biofuels development #3rdBaseThurs biorxiv.org/content/10.110…
Codon Statistics Database: a Database of Codon Usage Bias. #CodonUsage #CodonStats @MolBioEvol academic.oup.com/mbe/advance-ar…
Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts 🔗buff.ly/3k6ehf1 ✏️By Milana Frenkel-Morgenstern and colleagues @ubarilan @AzrieliOf #COVID19 #SARSCoV2 #codonusage
Coevolution of viruses and their hosts: Infection can affect #codonusage bias 🦠 #CitedEnsembl @NatureEcoEvo buff.ly/2Q1HsAf #evolution #virology
Great work by Hammel et al. (2024) on demonstrating the impact of #CodonUsage on the efficiency of nuclear transgene expression (e.g. YFP 🔆) in the red alga #Porphyridium purpureum and its efficient recombinant protein secretion into the culture medium. 🔗link.springer.com/article/10.100…
just submitted our poster for printing #CodonUsage #PSBMB2019... onwards to other admin and research stuff
there is still hope!!! I thought it was an absolute deadline that we failed to meet. #NextManuscript #CodonUsage fight lang!!!
Check out our latest #CodonUsage paper @NatureComms ! First author: @rkstewart89 , with collaborators @alaederach and @pelincvolkan ! We identify the CPEB RNA binding protein Orb2 as key to rare codon expression during neural stem cell differentiation. rdcu.be/dLowS
In the paper we present a new metric for quantifying virus dinucleotide representation under a null hypothesis of equal synonymous codon usage. #dinucleotides #codonusage
Crowdsourcing: What's a reliable formula to calculate for error bars? Standard deviation? Standard error? Standard error of the mean? etc?? Nakakahilo sa dami ng pwedeng formula! #NextPublication #CodonUsage
Yes - the 'code within the code' is heavily studied (also in Edinburgh!) but still poorly understood #codonusage #codonoptimisation
I've not seen this one advertised on twitter yet, so here it comes: 🚨 The 2nd workshop on #CodonUsage is happening again in beautiful Edinburgh and the speaker line up is absolutely fantastic! 🚨 Check it out 👇 sites.google.com/view/codonconf…
Bakit kulang ng isa ang sequences ko??! haayyy... now I have to go through each sequence in the data file (~100 lang naman ito kaya kaya lang) #Tension #CodonUsage
#Codonusage bias and #purifyingselection identified in Cirrhinus reba #mitogenome bsmiab.org/jabet/178-1652…
Unveiling codon usage patterns across diverse plant lineages! Explore how evolutionary forces shape genetic coding in plants. Check out our latest study: [rdcu.be/eaDhH] #PlantGenomics #CodonUsage #EvolutionaryBiology #PlantScience #MolecularGenetics
We further show that so-called "silent" mutations in the receptor mGluR alter fly behavior, underscoring an important role for #Codonusage in neurons.
Check out our latest #CodonUsage paper @NatureComms ! First author: @rkstewart89 , with collaborators @alaederach and @pelincvolkan ! We identify the CPEB RNA binding protein Orb2 as key to rare codon expression during neural stem cell differentiation. rdcu.be/dLowS
While the #RNA world is streaming towards Edinburgh, I'm on the plane back home after a fantastic 2nd edition of the #CodonUsage workshop! I'm incredibly proud to still be part of such a scientifically diverse community & cannot wait to see all the amazing science emerging soon!
Yi Liu kicking off the 2nd edition of the #CodonUsage workshop in beautiful #Edinburgh! It's all about building a community for scientists from incredibly diverse backgrounds. Looking forward to a fantastic lineup this year!
Great work by Hammel et al. (2024) on demonstrating the impact of #CodonUsage on the efficiency of nuclear transgene expression (e.g. YFP 🔆) in the red alga #Porphyridium purpureum and its efficient recombinant protein secretion into the culture medium. 🔗link.springer.com/article/10.100…
I've not seen this one advertised on twitter yet, so here it comes: 🚨 The 2nd workshop on #CodonUsage is happening again in beautiful Edinburgh and the speaker line up is absolutely fantastic! 🚨 Check it out 👇 sites.google.com/view/codonconf…
Happy to share our work exploring the role of A/T-ending codons across species, tissues, development, gene families and protein complexes🧬🦧🧠 👉bit.ly/cellsystems @CRGenomica @lab_serrano with @mirimiam @weghornlab @MartinHSchaefer #codonusage #rasgenes @CellSystemsCP
Glad to share our new published paper #codon #codonusage #codonusagebias #prokaryoticgenomics #molecularevolution link.springer.com/article/10.100…
Codon Statistics Database: a Database of Codon Usage Bias. #CodonUsage #CodonStats @MolBioEvol academic.oup.com/mbe/advance-ar…
Which Yeasts are Xylose Beasts? New work from myself @RokasLab @HittingerLab @KtlnFisher @DOpulente & UG trainees shows how #codonusage is better than gene content at predicting xylose catabolism - which is critical in biofuels development #3rdBaseThurs biorxiv.org/content/10.110…
Welcome to the world of codons. Excited to attend my first PhD conference on codon usage. #EMBO_CU22 #codonusage
Please check our recent work on the Temporal evolution and adaptation of SARS-CoV-2 codon usage imrpress.net/journal/FBL/27… @GeorgakilasAlex #georgakilaslab #codonusage #SARSCoV2 #Bioinformatics
Online now: In this study, the #chloroplast genomes in nine #Gynostemma species were analyzed systematically to explore the factors affecting the formation of #codonusage bias. @CUHKMedicine @PKU1898 @SpringerPlants link.springer.com/article/10.100…
Mutated oncogenes & the importance of codons: We revisit this recommendation by Chava Kimchi-Sarfaty, Douglas Meyer, and Upendra Katneni of @MartinHSchaefer @_BIST in @PNASNews #oncogenes #cancergenetics #codonusage facultyopinions.com/prime/73904891…
Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts 🔗buff.ly/3k6ehf1 ✏️By Milana Frenkel-Morgenstern and colleagues @ubarilan @AzrieliOf #COVID19 #SARSCoV2 #codonusage
#CodonUsage peeps we love CodonW but parsing the output codon table is onerous. I wrote a python program that computes the relative synonymous codon Usage (RSCU) of each CDS and outputs a clean analysis-ready 61 x n (cds) table. github.com/rhondene/Codon…
Identification of conserved slow codons that are important for protein expression and function. #CodonUsage #ProteinExpression tandfonline.com/doi/full/10.10… #RNABiologyJournal
It took a bit of convincing, but the Kudla lab @mrc_hgu is now on twitter‼️ #RNA #syntheticbiology #codonusage 👇Tweets by the mastermind himself👇
Which mutations change the colour, fluorescence intensity and metal ion binding of an RNA-ligand complex? Olga Puchta collected 7 million genotype-phenotype associations to find out. Well done Olga, Greg, Graeme, @jmbujnicki @doyarzunrod @dynafluors! biorxiv.org/content/10.110…
Welcome to the world of codons. Excited to attend my first PhD conference on codon usage. #EMBO_CU22 #codonusage
Coevolution of viruses and their hosts: Infection can affect #codonusage bias 🦠 #CitedEnsembl @NatureEcoEvo buff.ly/2Q1HsAf #evolution #virology
Which Yeasts are Xylose Beasts? New work from myself @RokasLab @HittingerLab @KtlnFisher @DOpulente & UG trainees shows how #codonusage is better than gene content at predicting xylose catabolism - which is critical in biofuels development #3rdBaseThurs biorxiv.org/content/10.110…
#Codonusage bias and #purifyingselection identified in Cirrhinus reba #mitogenome bsmiab.org/jabet/178-1652…
Yi Liu takes us on a deep dive into the influence of #codonusage on transcription and translation.. implications for troubleshooting heterologous expression‽ #fungal19 #UhOh
Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts 🔗buff.ly/3k6ehf1 ✏️By Milana Frenkel-Morgenstern and colleagues @ubarilan @AzrieliOf #COVID19 #SARSCoV2 #codonusage
Yi Liu kicking off the 2nd edition of the #CodonUsage workshop in beautiful #Edinburgh! It's all about building a community for scientists from incredibly diverse backgrounds. Looking forward to a fantastic lineup this year!
While the #RNA world is streaming towards Edinburgh, I'm on the plane back home after a fantastic 2nd edition of the #CodonUsage workshop! I'm incredibly proud to still be part of such a scientifically diverse community & cannot wait to see all the amazing science emerging soon!
Great work by Hammel et al. (2024) on demonstrating the impact of #CodonUsage on the efficiency of nuclear transgene expression (e.g. YFP 🔆) in the red alga #Porphyridium purpureum and its efficient recombinant protein secretion into the culture medium. 🔗link.springer.com/article/10.100…
Mutated oncogenes & the importance of codons: We revisit this recommendation by Chava Kimchi-Sarfaty, Douglas Meyer, and Upendra Katneni of @MartinHSchaefer @_BIST in @PNASNews #oncogenes #cancergenetics #codonusage facultyopinions.com/prime/73904891…
Online now: In this study, the #chloroplast genomes in nine #Gynostemma species were analyzed systematically to explore the factors affecting the formation of #codonusage bias. @CUHKMedicine @PKU1898 @SpringerPlants link.springer.com/article/10.100…
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