#readmapping 搜尋結果
Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe. #Pangenome #ReadMapping #PangenomeGraphs @biorxivpreprint biorxiv.org/content/10.110…
Comparison of #ReadMapping and #VariantCalling #Tools for the Analysis of #Plant #NGS #Data bit.ly/2FyUXoX #OpenScience #SciComm #PubMed #WomenWhoCode #100DaysOfCode #plantsci #researchpaper #Bioinformatics #Genomics #CompBio #benchmarking #Linux #education #science
Efficient short read mapping to a pangenome that is represented by a graph of ED strings. #Pangenome #ReadMapping #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
Efficient short read mapping to a pangenome that is represented by a graph of ED strings
AbstractMotivation. A pangenome represents many diverse genome sequences of the same species. In order to cope with small variations as well as structural
ProDerAl: Reference Position Dependent Alignment. #ReadMapping academic.oup.com/bioinformatics… via #Bioinformatics
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes. #ReadMapping #Liftover #ReferenceGenomes biorxiv.org/content/10.110… @biorxiv_bioinfo
invMap: a sensitive mapping tool for long noisy reads with inversion structural variants. #StructuralVariants #LonReads #ReadMapping #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
invMap: a sensitive mapping tool for long noisy reads with inversion structural variants
AbstractMotivation. Longer reads produced by PacBio or Oxford Nanopore sequencers could more frequently span the breakpoints of structural variations (SVs)
A survey of mapping algorithms in the long-reads era. #LongReads #SequencingData #ReadMapping @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…
Efficient Construction and Utilization of k-Ordered FM-indexes with kISS for Ultra-Fast Read Mapping in Large Genomes. #ReadMapping #LargeGenomes #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
Efficient construction and utilization of k-ordered FM-indexes with kISS for ultra-fast read...
AbstractMotivation. The Full-text index in Minute space (FM-index) is a memory-efficient data structure widely used in bioinformatics for solving the funda
Accelerating long-read analysis on modern CPUs. #ArchitectureOptimization #LongReads #ReadMapping #minimap2 biorxiv.org/content/10.110… @biorxivpreprint #Bioinformatics
Comparison of #ReadMapping and #VariantCalling Tools for the Analysis of #Plant #NGS #Data bit.ly/3luy8n6 #OpenScience #100DaysOfCode #BigData #DataScience #AI #WomenWhoCode #Linux #Python #coding #MachineLearning #serverless #SciComm #STEMeducation #phdchat #edu
Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels. #NGS #ReadMapping #VariantCalling #Benchmarking bmcbioinformatics.biomedcentral.com/articles/10.11… @BMCBioinfo
Genetically Improved BarraCUDA. #arXiv #readmapping arxiv.org/abs/1505.07855
Definitely one of the best alignment tools for sequencing reads of all lengths #genomics #bioinformatics #readmapping
bwa-mem2 pre-release. Identical alignments. 80% faster. github.com/bwa-mem2/bwa-m…
RNA-Seq Read Mapping and Quantification: by Peter N.... bit.ly/1sBEqgn #Presentations #quantitifcation #readmapping #RNAseq
RNA-SEQ – Mapping to a Reference Genome: RNA-SEQ – Mapping to a… bit.ly/1Y52Wbb #Presentations #DataAnalysis #readmapping #RNAseq
ACMS Colloquium – Statistical modeling of #RNA sequencing data bit.ly/1EmROij #Workshops #readmapping #statisticalmodeling #RNAseq
'Mapping-based genome size estimation' @biorxiv_genomic biorxiv.org/content/10.110… #longread #genomeassembly #readmapping #bigdata #compbio #Science #datascience #OpenData #plants #plantsci
Mapping-based genome size estimation biorxiv.org/cgi/content/sh… #biorxiv_genomic
Efficient Construction and Utilization of k-Ordered FM-indexes with kISS for Ultra-Fast Read Mapping in Large Genomes. #ReadMapping #LargeGenomes #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
Efficient construction and utilization of k-ordered FM-indexes with kISS for ultra-fast read...
AbstractMotivation. The Full-text index in Minute space (FM-index) is a memory-efficient data structure widely used in bioinformatics for solving the funda
invMap: a sensitive mapping tool for long noisy reads with inversion structural variants. #StructuralVariants #LonReads #ReadMapping #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
invMap: a sensitive mapping tool for long noisy reads with inversion structural variants
AbstractMotivation. Longer reads produced by PacBio or Oxford Nanopore sequencers could more frequently span the breakpoints of structural variations (SVs)
A survey of mapping algorithms in the long-reads era. #LongReads #SequencingData #ReadMapping @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…
Efficient short read mapping to a pangenome that is represented by a graph of ED strings. #Pangenome #ReadMapping #Bioinformatics academic.oup.com/bioinformatics…
academic.oup.com
Efficient short read mapping to a pangenome that is represented by a graph of ED strings
AbstractMotivation. A pangenome represents many diverse genome sequences of the same species. In order to cope with small variations as well as structural
Accelerating long-read analysis on modern CPUs. #ArchitectureOptimization #LongReads #ReadMapping #minimap2 biorxiv.org/content/10.110… @biorxivpreprint #Bioinformatics
Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels. #NGS #ReadMapping #VariantCalling #Benchmarking bmcbioinformatics.biomedcentral.com/articles/10.11… @BMCBioinfo
Comparison of #ReadMapping and #VariantCalling Tools for the Analysis of #Plant #NGS #Data bit.ly/3luy8n6 #OpenScience #100DaysOfCode #BigData #DataScience #AI #WomenWhoCode #Linux #Python #coding #MachineLearning #serverless #SciComm #STEMeducation #phdchat #edu
Comparison of #ReadMapping and #VariantCalling Tools for the Analysis of #Plant #NGS #Data bit.ly/3luy8n6 #OpenScience #100DaysOfCode #BigData #DataScience #AI #WomenWhoCode #Linux #Python #coding #MachineLearning #serverless #SciComm #STEMeducation #phdchat #edu
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes. #ReadMapping #Liftover #ReferenceGenomes biorxiv.org/content/10.110… @biorxiv_bioinfo
ProDerAl: Reference Position Dependent Alignment. #ReadMapping academic.oup.com/bioinformatics… via #Bioinformatics
Comparison of #ReadMapping and #VariantCalling #Tools for the Analysis of #Plant #NGS #Data bit.ly/2FyUXoX #OpenScience #SciComm #PubMed #WomenWhoCode #100DaysOfCode #plantsci #researchpaper #Bioinformatics #Genomics #CompBio #benchmarking #Linux #education #science
Definitely one of the best alignment tools for sequencing reads of all lengths #genomics #bioinformatics #readmapping
bwa-mem2 pre-release. Identical alignments. 80% faster. github.com/bwa-mem2/bwa-m…
'Mapping-based genome size estimation' @biorxiv_genomic biorxiv.org/content/10.110… #longread #genomeassembly #readmapping #bigdata #compbio #Science #datascience #OpenData #plants #plantsci
Mapping-based genome size estimation biorxiv.org/cgi/content/sh… #biorxiv_genomic
RNA-SEQ – Mapping to a Reference Genome: RNA-SEQ – Mapping to a… bit.ly/1Y52Wbb #Presentations #DataAnalysis #readmapping #RNAseq
Genetically Improved BarraCUDA. #arXiv #readmapping arxiv.org/abs/1505.07855
ACMS Colloquium – Statistical modeling of #RNA sequencing data bit.ly/1EmROij #Workshops #readmapping #statisticalmodeling #RNAseq
RNA-Seq Read Mapping and Quantification: by Peter N.... bit.ly/1sBEqgn #Presentations #quantitifcation #readmapping #RNAseq
Comparison of #ReadMapping and #VariantCalling #Tools for the Analysis of #Plant #NGS #Data bit.ly/2FyUXoX #OpenScience #SciComm #PubMed #WomenWhoCode #100DaysOfCode #plantsci #researchpaper #Bioinformatics #Genomics #CompBio #benchmarking #Linux #education #science
Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe. #Pangenome #ReadMapping #PangenomeGraphs @biorxivpreprint biorxiv.org/content/10.110…
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